Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028840.1 Length=111751 Score E Sequences producing significant alignments: (Bits) Value seq3176 125 5e-24 seq3532 84.2 2e-11 >seq3176 Length=18404 Score = 125 bits (138), Expect = 5e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 106572 ATTGAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTGGATGCA 106631 || ||||||||||||||||| || || || ||| | | ||||| ||| |||||||| Sbjct 6500 ATCGAAGGTGGTCAACACCTGAACGTGAACGTGATGAACCGTGAAATGCTGTTGGATGCC 6441 Query 106632 CAGAAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTACGT 106691 | |||| || |||||||| || || || || ||||||||||| || || || || || Sbjct 6440 ATGGAACACCCGGAAAAATATCCGCAGTTGACCATCCGTGTTTCTGGTTATGCCGTGCGC 6381 Query 106692 TTTAATGCACTGACGCGTGAACAACAGAACGACGTTATTAGTCGTACATTTACTCAGGCG 106751 || || | ||||| ||||| ||| | |||||||||| ||||| || |||||| | Sbjct 6380 TTCAACTCGCTGACCAAAGAACAGCAGCAAGACGTTATTACCCGTACTTTCACTCAGTCA 6321 Query 106752 ATGTAAT 106758 ||||||| Sbjct 6320 ATGTAAT 6314 >seq3532 Length=11862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 106575 GAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTGGATGCACAG 106634 ||||| || |||||||| || || || || | | ||||| ||| ||||| Sbjct 11332 GAAGGGGGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACGCTGGAAGATGCGGTA 11273 Query 106635 AAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTACGTTTT 106694 ||||| || ||||||||||| || || || ||||||||||| || || || || ||||| Sbjct 11272 AAACACCCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGTTATGCAGTGCGTTTC 11213 Query 106695 AATGCACTGACGCGTGAACAACAGAACGACGTTATTAGTCGTACATTTACT 106745 || || |||| | ||||| || ||||| |||| ||||| || ||| Sbjct 11212 AACTCATTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACTTTCACT 11162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357461112344576