Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028841.1 Length=44952 Score E Sequences producing significant alignments: (Bits) Value seq3357 104 7e-18 seq2649 104 7e-18 seq2347 104 7e-18 >seq3357 Length=2553 Score = 104 bits (114), Expect = 7e-18 Identities = 197/288 (68%), Gaps = 4/288 (1%) Strand=Plus/Plus Query 3736 GAATCTGTTGAAACAGCTAACCCCGGACGACCCAATACAGCGTTTGACGGGTTTGTGACA 3795 || |||||||| || || ||||| || || || |||||||| ||||| || ||||| Sbjct 2230 GAGTCTGTTGAGACGGCGAACCCTGGCCGTCCGAATACAGCATTTGATGGTTTTGTTGTT 2289 Query 3796 TCAATTCTCAGACAGGTAGGCTCAGCGTTAGAAATCCCCTATGAATTGCTCGTCAAACAC 3855 | ||| | | ||| | || | || | ||| | || |||||| | | || ||||| Sbjct 2290 GCTATTTGCCGTCAGATCGGTGCTGCTCTGGAATTACCGTATGAACTTTTGGTTAAACAT 2349 Query 3856 TTCACAGCCTCGTATTCAGCGTCT--AGAGCAGCTTTACTCGAAGCGTGGAAAATGTTCC 3913 || || ||| ||| |||| | || || || | || ||||| ||||| |||||| Sbjct 2350 TTTACGGCCAGTTAT--AGCGCCAGCAGGGCGGCACTGCTGGAAGCCTGGAAGATGTTCA 2407 Query 3914 GAATGCGCCGGGCATGGTTAGCATCAGATTTTTGTCAGCCCATATACGAAGAATGGTTTG 3973 | ||||| |||| |||| | | | |||||||||||||| || || || ||| | Sbjct 2408 GGATGCGACGGGAATGGATGGTGTTGTCGTTTTGTCAGCCCATTTATGAGGAGTGGCTCT 2467 Query 3974 CAGAAGCCGTAGCGAAGGGGAGAATCTCAGCGCCCGGCTTTTTTGATG 4021 | ||||| || ||||| || | | || |||||||||||| ||| Sbjct 2468 CTGAAGCAGTGGCGAAAGGCCGGGTAATTGCCCCCGGCTTTTTTTATG 2515 Score = 95.1 bits (104), Expect = 3e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 3499 GAGCGCCCGGAACAACGGCGAGGCGTGCCTATCTTGGCTCCGGTCATTGAATCTCTCAAA 3558 ||||| |||| |||||| || || || || || | | || ||||||||| | ||||| Sbjct 1978 GAGCGTCCGGGACAACGTCGCGGAGTTCCCCTCCTCTCCCCTGTCATTGAAGCGCTCAAG 2037 Query 3559 CAGCTCGGCACCTATACCCATGCGGAGTTGATGGCTGCGGTTGTGTCTGGCATGTTTACC 3618 ||||| || ||||||| |||| ||| || |||| ||||| || || || | ||||| Sbjct 2038 CAGCTGGGTCGCTATACCGATGCCGAGCTGGTGGCGGCGGTAGTTTCAGGTCTATTTACT 2097 Query 3619 GTGTTTGTCAAAACAGA 3635 || || ||||||||||| Sbjct 2098 GTTTTCGTCAAAACAGA 2114 >seq2649 Length=2531 Score = 104 bits (114), Expect = 7e-18 Identities = 197/288 (68%), Gaps = 4/288 (1%) Strand=Plus/Minus Query 3736 GAATCTGTTGAAACAGCTAACCCCGGACGACCCAATACAGCGTTTGACGGGTTTGTGACA 3795 || |||||||| || || ||||| || || || |||||||| ||||| || ||||| Sbjct 324 GAGTCTGTTGAGACGGCGAACCCTGGCCGTCCGAATACAGCATTTGATGGTTTTGTTGTT 265 Query 3796 TCAATTCTCAGACAGGTAGGCTCAGCGTTAGAAATCCCCTATGAATTGCTCGTCAAACAC 3855 | ||| | | ||| | || | || | ||| | || |||||| | | || ||||| Sbjct 264 GCTATTTGCCGTCAGATCGGTGCTGCTCTGGAATTACCGTATGAACTTTTGGTTAAACAT 205 Query 3856 TTCACAGCCTCGTATTCAGCGTCT--AGAGCAGCTTTACTCGAAGCGTGGAAAATGTTCC 3913 || || ||| ||| |||| | || || || | || ||||| ||||| |||||| Sbjct 204 TTTACGGCCAGTTAT--AGCGCCAGCAGGGCGGCACTGCTGGAAGCCTGGAAGATGTTCA 147 Query 3914 GAATGCGCCGGGCATGGTTAGCATCAGATTTTTGTCAGCCCATATACGAAGAATGGTTTG 3973 | ||||| |||| |||| | | | |||||||||||||| || || || ||| | Sbjct 146 GGATGCGACGGGAATGGATGGTGTTGTCGTTTTGTCAGCCCATTTATGAGGAGTGGCTCT 87 Query 3974 CAGAAGCCGTAGCGAAGGGGAGAATCTCAGCGCCCGGCTTTTTTGATG 4021 | ||||| || ||||| || | | || |||||||||||| ||| Sbjct 86 CTGAAGCAGTGGCGAAAGGCCGGGTAATTGCCCCCGGCTTTTTTTATG 39 Score = 95.1 bits (104), Expect = 3e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 3499 GAGCGCCCGGAACAACGGCGAGGCGTGCCTATCTTGGCTCCGGTCATTGAATCTCTCAAA 3558 ||||| |||| |||||| || || || || || | | || ||||||||| | ||||| Sbjct 576 GAGCGTCCGGGACAACGTCGCGGAGTTCCCCTCCTCTCCCCTGTCATTGAAGCGCTCAAG 517 Query 3559 CAGCTCGGCACCTATACCCATGCGGAGTTGATGGCTGCGGTTGTGTCTGGCATGTTTACC 3618 ||||| || ||||||| |||| ||| || |||| ||||| || || || | ||||| Sbjct 516 CAGCTGGGTCGCTATACCGATGCCGAGCTGGTGGCGGCGGTAGTTTCAGGTCTATTTACT 457 Query 3619 GTGTTTGTCAAAACAGA 3635 || || ||||||||||| Sbjct 456 GTTTTCGTCAAAACAGA 440 >seq2347 Length=2531 Score = 104 bits (114), Expect = 7e-18 Identities = 197/288 (68%), Gaps = 4/288 (1%) Strand=Plus/Plus Query 3736 GAATCTGTTGAAACAGCTAACCCCGGACGACCCAATACAGCGTTTGACGGGTTTGTGACA 3795 || |||||||| || || ||||| || || || |||||||| ||||| || ||||| Sbjct 2208 GAGTCTGTTGAGACGGCGAACCCTGGCCGTCCGAATACAGCATTTGATGGTTTTGTTGTT 2267 Query 3796 TCAATTCTCAGACAGGTAGGCTCAGCGTTAGAAATCCCCTATGAATTGCTCGTCAAACAC 3855 | ||| | | ||| | || | || | ||| | || |||||| | | || ||||| Sbjct 2268 GCTATTTGCCGTCAGATCGGTGCTGCTCTGGAATTACCGTATGAACTTTTGGTTAAACAT 2327 Query 3856 TTCACAGCCTCGTATTCAGCGTCT--AGAGCAGCTTTACTCGAAGCGTGGAAAATGTTCC 3913 || || ||| ||| |||| | || || || | || ||||| ||||| |||||| Sbjct 2328 TTTACGGCCAGTTAT--AGCGCCAGCAGGGCGGCACTGCTGGAAGCCTGGAAGATGTTCA 2385 Query 3914 GAATGCGCCGGGCATGGTTAGCATCAGATTTTTGTCAGCCCATATACGAAGAATGGTTTG 3973 | ||||| |||| |||| | | | |||||||||||||| || || || ||| | Sbjct 2386 GGATGCGACGGGAATGGATGGTGTTGTCGTTTTGTCAGCCCATTTATGAGGAGTGGCTCT 2445 Query 3974 CAGAAGCCGTAGCGAAGGGGAGAATCTCAGCGCCCGGCTTTTTTGATG 4021 | ||||| || ||||| || | | || |||||||||||| ||| Sbjct 2446 CTGAAGCAGTGGCGAAAGGCCGGGTAATTGCCCCCGGCTTTTTTTATG 2493 Score = 95.1 bits (104), Expect = 3e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 3499 GAGCGCCCGGAACAACGGCGAGGCGTGCCTATCTTGGCTCCGGTCATTGAATCTCTCAAA 3558 ||||| |||| |||||| || || || || || | | || ||||||||| | ||||| Sbjct 1956 GAGCGTCCGGGACAACGTCGCGGAGTTCCCCTCCTCTCCCCTGTCATTGAAGCGCTCAAG 2015 Query 3559 CAGCTCGGCACCTATACCCATGCGGAGTTGATGGCTGCGGTTGTGTCTGGCATGTTTACC 3618 ||||| || ||||||| |||| ||| || |||| ||||| || || || | ||||| Sbjct 2016 CAGCTGGGTCGCTATACCGATGCCGAGCTGGTGGCGGCGGTAGTTTCAGGTCTATTTACT 2075 Query 3619 GTGTTTGTCAAAACAGA 3635 || || ||||||||||| Sbjct 2076 GTTTTCGTCAAAACAGA 2092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143718027687424