Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq3842 118 2e-22 seq2657 84.2 5e-12 >seq3842 Length=22882 Score = 118 bits (130), Expect = 2e-22 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 9778 CTTAACGGCTTTTGGTGTTGCGGCGAGCGTCTCAGACATGCTGTTGGTCGCACTACTTAG 9837 ||| || ||||| ||||| || || | ||| ||| ||||||||||||| ||||| | Sbjct 22770 CTTCACCGCTTTGGGTGTGGCAGCCATCGTTTCATCATTGCTGTTGGTCGCGCTACTCAA 22711 Query 9838 CTGGACAAGACCTTTTCGCGCTGTGGTAGCGTCCTGTGCGGTATATTTCCCGTTAGCAAG 9897 | ||||| || ||| || ||| | || |||||||| | ||||||||| | || || Sbjct 22710 CCTGACAATGCCCTTTTGCCTGGTGCTCGCATCCTGTGCTGAGTATTTCCCGCTGGCGAG 22651 Query 9898 GTCATATGCGGCCTTAACCGCTTTCGGCGTTGCGGCCAGTGTTTCAGACGTGCTGTTGGT 9957 |||||| || || || || ||||| ||||| || |||| |||||| |||||||||| Sbjct 22650 GTCATAGGCTGCTTTCACTGCTTTTGGCGTCGCCGCCATCGTTTCATCATTGCTGTTGGT 22591 Query 9958 CGC 9960 ||| Sbjct 22590 CGC 22588 Score = 113 bits (124), Expect = 9e-21 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 12358 CCGTTTGATGAGAGTTCACCGCCGGTGTGTTCAATGTTGCCGCGCATCGTCCCGCCCTTC 12417 ||||| || | || | |||||| ||||| ||||||||||| |||| ||||| || Sbjct 19920 CCGTTGGAGGTGAACGCGCCGCCGCTGTGTGCAATGTTGCCGTGCATTTCTCCGCCTTTT 19861 Query 12418 TGCACTTCCAGCGTGCCGGTAGTCAGTTTGTTGGTGCAGACCACTTCCGGTGTGTCCAGG 12477 ||||||||||||||||| || ||||| |||||||| || | ||||||||| || || ||| Sbjct 19860 TGCACTTCCAGCGTGCCTGTCGTCAGCTTGTTGGTACAAATCACTTCCGGCGTATCTAGG 19801 Query 12478 GTGATGCGGGTT 12489 |||| ||||| Sbjct 19800 ATGATATGGGTT 19789 Score = 109 bits (120), Expect = 1e-19 Identities = 309/469 (66%), Gaps = 12/469 (3%) Strand=Plus/Minus Query 9827 GCACTACTTAGCTGGACAAGACCTTTTCGCGCTGTGGTAGCGTCCTGTGCGGTATATTTC 9886 || ||||| ||| ||||| || ||| || ||| | || |||||||| | |||||| Sbjct 22509 GCGCTACTCAGCCTGACAATGCCCTTTTGCCTAGTGCTCGCATCCTGTGCTGAGTATTTC 22450 Query 9887 CCGTTAGCAAGGTCATATGCGGCCTTAACCGCTTTCGGCGTTGCGGCCAGTGTTTCAGAC 9946 ||| | || |||||||| | | || || |||||||||||||| |||| | |||| Sbjct 22449 CCGCTGGCGAGGTCATAGGTTGTTTTCACTGCTTTCGGCGTTGCCGCCATCGCTTCACTG 22390 Query 9947 GTGCTGTTGGTCGCATTGCTTAACTGAGTAAAACCTTTTGCGGTCAGCGAGGCGTCCGGG 10006 | |||| || |||||||| || || ||| |||||||| |||| ||||| || Sbjct 22389 GCACTGTCCGTGGCATTGCTCAATTGCACAAAGCCTTTTGCCTCAAGCGTTGCGTCTGGA 22330 Query 10007 TG---ACGTCGTGACTGTTCATGCTCTGCAATTTTGTCATCAACGTAATCCTGCGTCGCC 10063 || ||| | | | ||||||| || || ||||| || || | |||| ||| Sbjct 22329 TGTTTACGGCTT---TTTTCATGCGTAGCGATAGCATCATCCACATAGCCACGCGTTGCC 22273 Query 10064 ATCACCGTTGTGGTGTCAATGGTCAGCTCCACTGAGGCCACACTGCTGACGATGATGACC 10123 | |||| | | ||||| | ||| |||| | ||| ||| || | | | Sbjct 22272 AGCACCACCGCCGGATCAATTTTAAGCGATACTGTTTCTGTGCTGGAGACAATCAAAATC 22213 Query 10124 ATGCGGCAGGTCTGCGAACGCCCTGAGCCTT-CGGCAAGGGTAGGTTTATAACTTTCGGC 10182 ||||| |||||| ||| || ||||| | |||| | || ||||| ||||||| Sbjct 22212 ATGCGCACGGTCTGAATACGTCCGCTGCCTTCCTGCAATTG-CGGCTTATAGGTTTCGGC 22154 Query 10183 CATGTTCGCCACGGCAATTAACGTTCCCGCATCATCGTACAGGCCAAGCTCTCGCATCCA 10242 ||| || || ||||| || | || || |||| ||||||| | || || ||||| Sbjct 22153 GCAGTTGGCAACCGCAATCAAATTACCTTCAGCATCAAACAGGCCGATTTCACGTATCCA 22094 Query 10243 GAAACCGCC--CACCTCCGGCGGAATAACCAGCTCTGCGATAATATAAT 10289 ||| || || || | || || || ||| || | || ||||||| || Sbjct 22093 GAATCCCCCTTCATTTTCG--GGGATCACCTGCACGGCAATAATATGAT 22047 Score = 105 bits (116), Expect = 1e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 32351 GAAGTAAAACCCGATTTACCTGACGGACAAGCAGTACATGTTTTGAGGCATACATTTGCC 32410 || || ||||||||||| ||| | || ||||||| ||| || | | ||||||||||| Sbjct 364 GAGGTCAAACCCGATTTGCCTAAAGGCCAAGCAGCACACGTACTACGTCATACATTTGCG 305 Query 32411 ACACATTTTATAATGAATGGAGGTAACATAATCACATTGCAGCGCATCCTGGGTCATTCT 32470 | || ||||| || |||||||| || || | || | ||| || |||| || | Sbjct 304 GCGCACTTTATGATTAATGGAGGCAATATTTTGACGCTACAGAAGATAATGGGACACGCA 245 Query 32471 AACATTCAGCAAACTATGACCTACGCACACTTTGCACCGGATTTCTTACAAGATGC 32526 ||||||||||| || |||||||| |||||| | ||||| || | | |||||||| Sbjct 244 AACATTCAGCAGACCATGACCTATGCACACCTCGCACCAGACTATCTGCAAGATGC 189 Score = 105 bits (116), Expect = 1e-18 Identities = 228/340 (67%), Gaps = 1/340 (0%) Strand=Plus/Minus Query 10602 CCAATAAGGTGGCGGCTTGCAGGTTTGGCATCAGCAATCAGCCGTTCCATTTCCTGATAC 10661 |||| ||| || ||||| || ||||| |||||||||||||| || || || | | Sbjct 21669 CCAACAAG-TGACGGCTAAGCGGCTTGGCGTCAGCAATCAGCCGCTCAATCTCTAAAAAG 21611 Query 10662 ATTGCCTCTGTGATACCGCTTTCCAGTACACCAATATCAAGCCGGAAGGTGCCTGGCGGG 10721 || | || || |||||| | ||| | || || ||||| || | ||||| || ||| Sbjct 21610 GTTTCTTCAGTAATACCGTTGTCCTGCACGCCGATATCCAGGTGAAAGGTTCCCGGCACA 21551 Query 10722 TCACTGTTTTCCCACCACTCCGTCACGTTAATGAGATAGCCGAGCGGCTCCACCACACGC 10781 | | | ||| |||||| || ||||| | | || || | ||||| ||||| || Sbjct 21550 CCGCCGGTTTGCCACCATTCGATCACGCGCAGCAAGTAACCAAATGGCTCAACCACCCGG 21491 Query 10782 CGGATTGCGCCGATAGTGCCTTTATGACAGTGGATGAAATAGGCATCGCGGATAACGGCA 10841 || | ||| | || |||||||| || | ||| || || |||| || || | Sbjct 21490 CGCAGCGCGGCAATGGTGCCTTTCTGGCGGTGTATCAACCAGGCTGATTTAATCACCTGA 21431 Query 10842 CGTTTGGTCGCTTCCGGCCACTTTTCATCCCACCTGTCGACCGAAAACGCCCACGCCAGC 10901 || ||||| ||| | ||| || |||||| | ||| || || |||||||| ||||| Sbjct 21430 CGCTTGGTTTGTTCTGACCAGCGTTTATCCCAGCGGTCAACGGACAACGCCCAGGCCAGA 21371 Query 10902 CACGGCAGCAGATTTGCCGGGCAGGTGTCCGGGTTCCACA 10941 | |||||||| | | |||||| | |||| | ||||| Sbjct 21370 AAAGGCAGCAGGTCTAGCGGGCATTTCTCCGCATCCCACA 21331 Score = 86.0 bits (94), Expect = 1e-12 Identities = 107/143 (75%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 27473 AAATTGCGGAATGCGCCACGTTGACGCCCATGCGGTAACAGCCGCGGCA-GTG-TCTTTC 27530 ||| || |||||| ||| |||||||| |||||| || ||| || ||| || || Sbjct 7008 AAACTGGCGAATGCCCCAGAGCGACGCCCAGGCGGTAGCA--CGCTGCGCGTGATCCTTT 6951 Query 27531 AGCGGCCTGCCGGTATCGTTATCGAGCTGACCATCCAGTGCATAGCCGTCGATGTTTTTT 27590 | |||| ||||| | |||| ||| | ||| || || |||||||| || || ||||| Sbjct 6950 AACGGCTTGCCGCTTTCGTCGTCGGTTTCACCGTCTAGGGCATAGCCATCAATATTTTTC 6891 Query 27591 GAAATGTATTTCGCGATATACCC 27613 |||||||||||||||| |||||| Sbjct 6890 GAAATGTATTTCGCGACATACCC 6868 Score = 82.4 bits (90), Expect = 2e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 9779 TTAACGGCTTTTGGTGTTGCGGCGAGCGTCTCAGACATGCTGTTGGTCGCACTACTTAGC 9838 || || |||||||| || || || | ||| ||| ||||||||||||| ||||| ||| Sbjct 22637 TTCACTGCTTTTGGCGTCGCCGCCATCGTTTCATCATTGCTGTTGGTCGCGCTACTCAGC 22578 Query 9839 TGGACAAGACCTTTTCGCGCTGTGGTAGCGTCCTGTGCGGTATATTTCCCGTTAGCAAGG 9898 ||||| || ||| || ||| | || |||||||| | ||||||||| | || ||| Sbjct 22577 CTGACAATGCCCTTTTGCCTAGTGCTCGCATCCTGTGCTGAGTATTTCCCGCTGGCGAGG 22518 Query 9899 TCATA 9903 ||||| Sbjct 22517 TCATA 22513 >seq2657 Length=15264 Score = 84.2 bits (92), Expect = 5e-12 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 32387 CATGTTTTGAGGCATACATTTGCCACACATTTTATAATGAATGGAGGTAACATAATCACA 32446 ||| || || | |||||||| |||| |||||| | ||||| ||||| ||| || | | Sbjct 15111 CATATTCTGCGACATACATTCGCCAGCCATTTTGTGATGAACGGAGGAAACTTAGTGGCG 15052 Query 32447 TTGCAGCGCATCCTGGGTCATTCTAACATTCAGCAAACTATGACCTACGCACACTTTGCA 32506 || |||| || | || || | | ||| || ||||||||||| || || ||| |||| Sbjct 15051 TTACAGCAGATATTAGGGCACGCCAGCATACAACAAACTATGACGTATGCTCACCTTGCC 14992 Query 32507 CCGGATTTCTTACAAGATGCTGTGACTCTTAACCCAGTG 32545 ||||| | | | ||| |||| | || || |||||| || Sbjct 14991 CCGGACTACCTGCAACATGCAATTACCCTCAACCCATTG 14953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104433478862592