Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq434 116 8e-22 >seq434 Length=366605 Score = 116 bits (128), Expect = 8e-22 Identities = 345/529 (65%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 24490 GTTTTCCATCAAGTAAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTG 24549 ||||| ||| | || ||| ||| |||||| ||| | || | ||||| ||||| Sbjct 159404 GTTTTGAATCTAAAAAAGTTTACATAGGTGTTTCGCCGTAACAATATCTTCCTGAATGTG 159463 Query 24550 TTCGATGGTGATTATAATACATTAACCACTCATCTAAATCCGCTTGTAATGTCGTTA--- 24606 || || ||||||| | | |||||| |||||| ||| ||| || | || Sbjct 159464 ATCTATATCGATTATATTGGAATAACCATTCATCTGCATCTCTTTGCAACTCCTCTATTG 159523 Query 24607 AATCCGTATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTAT 24666 ||| ||||||||||||||||||||| | ||||||||||| || || |||| Sbjct 159524 AAT---TATAAATTTTCTTCCTAAATGGAGTATCATAAAATTCTTGCTTCATAGTCTTAT 159580 Query 24667 GGAACCGTTCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAA 24726 | || | || || || || || || || || ||| | || ||| | | ||||||| Sbjct 159581 GAAATCTCTCACAAATACCATTGGTTTGAGGTGAGTTTGCTTTAGTTGTGGTATGTTCAA 159640 Query 24727 TATCATTTATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCAC 24786 | | | || |||||| | |||||| |||||||||||| | |||||||| ||| Sbjct 159641 TCCCTTCTACACTTAAATATAACTCATATGCGTGATTTTCTAAGGTTCCACAATACTCAG 159700 Query 24787 TTCCTCGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATG--GTAA 24844 | |||| || ||||||| | || || || | || | |||| | | |||| Sbjct 159701 TCCCTCTATCTGTTAATACTCTCAATATATCTACATTATGTTCTGTAAAGAAAGGTGTAA 159760 Query 24845 CACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGC 24904 ||| |||||||| || |||||| | | |||| || || ||||| || || | Sbjct 159761 CAC--AATCATTCAATATTTCCGCACTAGTCATAGGTGTTTTATCAGTATAGAGCTTAGA 159818 Query 24905 AAACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTT 24964 ||||| || |||||||||| |||||| ||||| || || |||||||| Sbjct 159819 TTCTGCCACACGCGAATATGTATCAATAACCGTTTGCTGATAGATCTTGCCAACTCCTTT 159878 Query 24965 GAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGT 25013 | | || || || | |||||||| | |||||| || || ||| Sbjct 159879 AATAGTACCTACGTAATATGTATCTTGAGCTATAAGATAACCTGGATGT 159927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114317813090816