Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028925.1 Length=170822 Score E Sequences producing significant alignments: (Bits) Value seq2351 159 4e-34 seq3690 102 9e-17 >seq2351 Length=10305 Score = 159 bits (176), Expect = 4e-34 Identities = 294/425 (69%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 143087 CATCAGGTTATTAAGCTGGACACCATAGTCCATATGTCTGATACGGTTTTCTTCAACGCC 143146 |||||| || || | ||| || || || || | || | | ||||| |||| ||||| Sbjct 2996 CATCAGCTTGTTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCC 2937 Query 143147 CTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGC 143206 |||||||||||| || || | |||| ||||||| |||||| | || ||| | Sbjct 2936 ACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAA 2877 Query 143207 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATG 143266 || || || ||||| || | || || ||||| |||||||| || || || |||||||| Sbjct 2876 CGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATG 2817 Query 143267 TTTCCAGAACGGAATAACACCAGTATGGCGAACTTCACCCATACCGATTTTCG---AACC 143323 ||| |||| |||||| ||||||||| ||||||| |||| ||| ||| Sbjct 2816 TTTATAGAAAGGAATACAGCCAGTATGGAATGCTTCACC---ACCGCGAATCGGGCTACC 2760 Query 143324 TTCAGCACGAATCATACCAACGTTGATGCCGATACCCGCACGCTTACTGATA--TATTCG 143381 |||||||| ||| |||| ||||||||||| ||||||| ||| | |||| Sbjct 2759 CAGCGCACGAATACGACCGGCGTTAATGCCGATACCGGCACGCT--GTGAAACGTATTTC 2702 Query 143382 ATGATTGAATTGGCCGTCTTATTAATTGACTTCAGGGAGTCAGCAGC-TTCGATAACCAC 143440 | ||| | | ||| || ||||| || | |||| ||| || || || || | ||| Sbjct 2701 ACGATAGCACTGGAGGTGGCGTTAATGGAATCCAGGCTGTC-GCCGCACTCAATCAACAC 2643 Query 143441 ACAGGAACTGAACTGCCTGGTAGGTGTTCTGGCGCCCGCCATGATGGGCGTGGGCAACGA 143500 ||||| |||||||| | ||| || || | |||| | |||||| ||||| ||||| || Sbjct 2642 GCAGGAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCAATGA 2583 Query 143501 AACCT 143505 || || Sbjct 2582 AATCT 2578 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/191 (71%), Gaps = 9/191 (5%) Strand=Plus/Minus Query 141019 AGAATATATTGGGTCCCCTTAAGGTGAAGCTGTTCATCACGGGCGATGAACTTCATTATC 141078 || |||| ||||| || | ||||| ||| |||||| |||||||| | || || || Sbjct 5088 AGCATATGCTGGGTACCGGTCAGGTGCAGCGCTTCATCGCGGGCGATCAGTTTGATAATT 5029 Query 141079 TTCGCATTGCCTTCCATGATTTCCATGTTCTTATGG--AAGTTGAAAGTACAAGCAAAAG 141136 || || ||||| ||||| | ||| |||| || ||| ||| | || || ||| Sbjct 5028 TTGGCGTTGCCCTCCATCAGTTCGC-GTTC----GGCAAAGGCGAATGAGCAGGCGAAAC 4974 Query 141137 ATACATAAAAACGAATTGCTTCCAGGGCGTTAATG-ACATGCAGGCAGAGATAAAGAGAT 141195 ||||||||||| || |||||||| ||||| | | ||| |||||| |||||||| | Sbjct 4973 TGACATAAAAACGGATGGCTTCCAGCGCGTTGACGCTCAT-CAGGCACAGATAAAGCTGT 4915 Query 141196 TTCATCAATGC 141206 ||| |||| || Sbjct 4914 TTCTTCAAGGC 4904 >seq3690 Length=4460 Score = 102 bits (112), Expect = 9e-17 Identities = 175/253 (69%), Gaps = 1/253 (0%) Strand=Plus/Plus Query 159340 TTGGTGCTCCTATTCCATGGCCAACAGATACTCCTCCTGCGGGTTATGCTTTAATGACGG 159399 ||||||| ||||| | ||||| | |||| | ||| || || ||||| | ||| || Sbjct 2310 TTGGTGCCCCTATCGCCTGGCCGTCGGATAATATTCCCGCAGGCTATGCCCTGATGCAGG 2369 Query 159400 GTCAGCCCTTTGACAAGAGCACATATCCCAAGCTTGCCGTTGCTTATCCATCAGGTACTA 159459 | ||| | ||||| || || | ||| |||||||| || | | |||||||||||| | | Sbjct 2370 GCCAGACTTTTGATAAAAGTAAATA-CCCAAGCTGGCTATAGTTTATCCATCAGGGATCA 2428 Query 159460 TTCCGGATATGCGTGGACAAACTATTAAGGGTAAACCGAGTGGTCGTGCCGTGCTGAGTG 159519 |||| ||||||||||| || || || || |||||||| || || ||| | || || Sbjct 2429 TTCCTGATATGCGTGGTCAGACCATAAAAGGTAAACCTGATGAACGGGCCATACTCAGCA 2488 Query 159520 CGGAAGCTGATGGTATTAAGTCTCATAATCATAGTGCTTCTGCATCTAATACTGATTTGG 159579 ||||| | ||| ||| | || || | ||| || | | || |||| ||||| | Sbjct 2489 GAGAAGCGGGTGGCATTCAATCCCACACACATTCAGCAACGGTTTCCAATAAGGATTTAG 2548 Query 159580 GTACTAAAACCAC 159592 | | ||| |||| Sbjct 2549 GGTCAAAAGCCAC 2561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546475293480960