Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq3532 197 1e-45 seq3176 158 1e-33 >seq3532 Length=11862 Score = 197 bits (218), Expect = 1e-45 Identities = 154/184 (84%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 131499 ATTATAAGCTCTCAGTAAAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 131558 |||| | ||| ||||| || ||||| | ||| ||||| || |||||||| || |||| | Sbjct 11149 ATTACAGGCTTTCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATG 11208 Query 131559 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 131618 |||| || || ||||||||||| || ||||||||||||| |||||| ||||||||||| | Sbjct 11209 AGTTGAAACGCACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGT 11268 Query 131619 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 131678 | || || ||||||||||| |||||||| ||||||||||| |||||||||||||| || | Sbjct 11269 GTTTTACCGCATCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCC 11328 Query 131679 CTTC 131682 |||| Sbjct 11329 CTTC 11332 >seq3176 Length=18404 Score = 158 bits (174), Expect = 1e-33 Identities = 141/177 (80%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 131509 CTCAGTAAAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 131568 || ||| || ||||| | ||||||||| |||||||||| ||||| ||||| ||||| Sbjct 6324 CTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCGAGTTGAAGCG 6383 Query 131569 AACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 131628 || |||||||| || ||||||||||||| |||||||||||||||||| || | | || Sbjct 6384 CACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGTGTTCCATGGC 6443 Query 131629 ATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 131685 ||| ||| ||||||| || ||||| ||||||||||||||||||||||| || Sbjct 6444 ATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCACCTTCGAT 6500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535199052810240