Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq3842 273 4e-69 seq2755 109 1e-19 seq2657 82.4 1e-11 >seq3842 Length=22882 Score = 273 bits (302), Expect = 4e-69 Identities = 654/981 (67%), Gaps = 26/981 (3%) Strand=Plus/Plus Query 18553 TGTGGAACCCGGACACCTGCCCGGCAAATCTGCTGCCGTGGCTGGCGTGGTCATTTTCGG 18612 ||||| | |||| | |||||| | | |||||||| | ||||| ||| | || || | Sbjct 21331 TGTGGGATGCGGAGAAATGCCCGCTAGACCTGCTGCCTTTTCTGGCCTGGGCGTTGTCCG 21390 Query 18613 TTGACCGCTGGGATGATAAGTGGCCGGAAGCGACAAAACGCGCTGTTATCCGCGATGCGT 18672 |||||||||||||| | ||| | ||| || || || || || || | Sbjct 21391 TTGACCGCTGGGATAAACGCTGGTCAGAACAAACCAAGCGTCAGGTGATTAAATCAGCCT 21450 Query 18673 ATTTCATTCACTGCCATAAGGGCACTATTGGTGCGATTCGCCGTGTGGTGGAGCCGCTCG 18732 || || ||| |||| || ||||| |||| ||| | ||||| ||||| ||||| | | Sbjct 21451 GGTTGATACACCGCCAGAAAGGCACCATTGCCGCGCTGCGCCGGGTGGTTGAGCCATTTG 21510 Query 18733 GCTATCTGATTGAGGTGAGGGAGTGGTGGCAGCTCAACGAGGAGCCGGGGACGTTCCGCA 18792 | || || | |||| || |||||||| | || | |||||| || || | | Sbjct 21511 GTTACTTGCTGCGCGTGATCGAATGGTGGCAAACCGGCGGTGTGCCGGGAACCTTTCACC 21570 Query 18793 TCGTTGTTGGCGTGCTTGAGCAGGGTATTACCGAGGAAATGTATCAGGAGCTGGAGCGTC 18852 | | | | ||||||| || | |||||||| || |||| | | ||| | ||||| | Sbjct 21571 TGGATATCGGCGTGCAGGACAACGGTATTACTGAAGAAACCTTTTTAGAGATTGAGCGGC 21630 Query 18853 TCGTTGCTGATGCAAAACCTGCAAGCCGCCATCTGACGGGACTGGCTATCAGTTTAAGTA 18912 | ||||||| || || || ||||| || || ||| || ||||| || || Sbjct 21631 TGATTGCTGACGCCAAGCCGCTTAGCCGTCACTTGTTGGGGCTCAATATCACGTTGGATA 21690 Query 18913 C--AACCGGCAACATTTTTGCCGGTGCGGGATGCTATCACGGCGACGCCCTGACGGTTTA 18970 | || || | | | | ||| | | | || ||||||| | |||| || || Sbjct 21691 CGCAAGGTGCGGCCTATGTCGCGGCCAGCGTT--TACGACGGCGATGAGTTGACCGTATA 21748 Query 18971 TCCCTACACCCCGGAGGCCATTAT-----TGTCGGAGGGGATTATTTCCCGGCCTCGGCC 19025 ||||| ||| || |||| | ||||| | | || |||| ||| Sbjct 21749 CCCCTATTTCCCTGAAACCATCACCGTGATGTCGCCGTACAGTA----CCGGTGCAGGC- 21803 Query 19026 ATTCATTTAATTGATAACCTGAGAGTAAACGCATGACAGTGAAATACTACGCCATTCTGA 19085 ||||| | ||||||| |||| |||| || |||| |||| | |||| | | | Sbjct 21804 ATTCACGTGATTGATACGATGAGTGTAACCGTATGAGTACAAAATTTTTCGCCCTGTTAA 21863 Query 19086 CTAATCAGGGCGCGGCACGGCTGGCTAACGCGACGATGCTCGG--CA-GTAAGCTGAATC 19142 | || |||||||| ||||||| ||||| || |||||| || || ||| || Sbjct 21864 CCAACATTGGCGCGGCCAGGCTGGCAAACGCAACTGCGCTCGGTTCACGT---CTGGATA 21920 Query 19143 TGACGCAAATGGCCGTTGGTGATGCAAATGGTGTGTTACCAACACCAGACCCTGCACAAA 19202 | ||||| |||||||| ||||| | || || ||||| || ||| |||| ||||| | Sbjct 21921 TCACGCATATGGCCGTCGGTGACGGCGGCGGCGTATTACCGACGCCAAACCCGGCACAGA 21980 Query 19203 CAAAACTGATTAACCAGAAACGCATTGCACCGCTGAATCTTCTGAGTGTTGACCCGAATA 19262 | | ||||||||| |||||||| || | | ||| ||||| || || || || | Sbjct 21981 CCACGCTGATTAACGAGAAACGCCGCGCGGCCATCAATAGCCTGAGCGTCGATCCCAACA 22040 Query 19263 A---CCAGAGCCAGATTATTGCGGAGCAAATCATCCCTGAGAACGAGGGCGGATTCTGGA 19319 | ||| || |||||||| | ||| | ||||| || || || || |||||||||| Sbjct 22041 ATACCCAT---CATATTATTGCCGTGCAGGTGATCCCCGAAAATGAAGGGGGATTCTGGA 22097 Query 19320 TCCGTGAGATTGGGCTTTATGATGATGAAGGCGTACTCATTGCGGTGGCAAACTGCCCGG 19379 | ||||| || || || | ||||| |||||| | |||||||| || |||||| | | Sbjct 22098 TACGTGAAATCGGCCTGTTTGATGCTGAAGGTAATTTGATTGCGGTTGCCAACTGCGCCG 22157 Query 19380 AAACGTACAAACCGCAGTTGCAGGAAGGAAGCGGTCGTACCCAGACTATCCGCATGATTC 19439 |||| || || ||||| ||||||||||| ||||| |||| ||||| | ||||||||| Sbjct 22158 AAACCTATAAGCCGCAATTGCAGGAAGGCAGCGGACGTATTCAGACCGTGCGCATGATTT 22217 Query 19440 TGGTTGTCTCGAATACCGAAGCCATCACGCTGAAAATCGATCCGTCGGTGGTACTGGCGA 19499 || ||||||| | || ||| | | |||| ||||| |||||| ||||||| ||||| | Sbjct 22218 TGATTGTCTCCAGCACAGAAACAGTATCGCTTAAAATTGATCCGGCGGTGGTGCTGGCAA 22277 Query 19500 CCCGTAAATACGTGGATGATG 19520 | ||| || |||||||||| Sbjct 22278 CGCGTGGCTATGTGGATGATG 22298 Score = 105 bits (116), Expect = 1e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 150 GCATCTTGTAAGAAATCCGGTGCAAAGTGTGCGTAGGTCATAGTTTGCTGAATGTTAGAA 209 |||||||| | | || ||||| | |||||| |||||||| || ||||||||||| | Sbjct 189 GCATCTTGCAGATAGTCTGGTGCGAGGTGTGCATAGGTCATGGTCTGCTGAATGTTTGCG 248 Query 210 TGACCCAGGATGCGCTGCAATGTGATTATGTTACCTCCATTCATTATAAAATGTGTGGCA 269 || |||| || ||| | || | || || |||||||| || ||||| || | ||| Sbjct 249 TGTCCCATTATCTTCTGTAGCGTCAAAATATTGCCTCCATTAATCATAAAGTGCGCCGCA 308 Query 270 AATGTATGCCTCAAAACATGTACTGCTTGTCCGTCAGGTAAATCGGGTTTTACTTC 325 |||||||| | | || ||| ||||||| || | ||| ||||||||||| || || Sbjct 309 AATGTATGACGTAGTACGTGTGCTGCTTGGCCTTTAGGCAAATCGGGTTTGACCTC 364 Score = 89.7 bits (98), Expect = 1e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 17005 AACCCGCATCACCCTGGACACCCCGGAGGTGGTCTGCACCAACAGACTGATTACCGGCAC 17064 ||||| |||| ||| || || ||||| ||| | || ||||||| |||| || ||||| Sbjct 19789 AACCCATATCATCCTAGATACGCCGGAAGTGATTTGTACCAACAAGCTGACGACAGGCAC 19848 Query 17065 GCTGGAAGTGCAGAAGGGCGGGACGATGCGCGGCAACATTAAACATACCGGCGGTGAACT 17124 |||||||||||| || ||||| |||| |||||||||| ||| | |||||| | | Sbjct 19849 GCTGGAAGTGCAAAAAGGCGGAGAAATGCACGGCAACATTGCACACAGCGGCGGCGCGTT 19908 Query 17125 CTCATCAAACgg 17136 | | || ||||| Sbjct 19909 CACCTCCAACGG 19920 Score = 82.4 bits (90), Expect = 1e-11 Identities = 93/121 (77%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 5055 GGATATATCGCGAAATACATTTCAAAAAACATCGACGGCTATGCACTGGATGGTCAGCTC 5114 || ||| |||||||||||||||| ||||| || || |||||||| || || ||| | | Sbjct 6868 GGGTATGTCGCGAAATACATTTCGAAAAATATTGATGGCTATGCCCTAGACGGTGAAACC 6927 Query 5115 GATAACGACACCGGCAGGCCGCTGAAAGA-CAC-TGCAGCGGCTGTTACCGCATGGGCGT 5172 || |||| | ||||| |||| | || || ||| |||||| || |||||| ||||||| Sbjct 6928 GACGACGAAAGCGGCAAGCCGTTAAAGGATCACGCGCAGCG--TGCTACCGCCTGGGCGT 6985 Query 5173 C 5173 | Sbjct 6986 C 6986 >seq2755 Length=11091 Score = 109 bits (120), Expect = 1e-19 Identities = 176/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 22021 GATACACTGGTGGTCTGGAAGCTGGACAGGCTGGGGCGTAATATGCGGCATCTGGTCATT 22080 ||||| |||||||||||||||||||| |||||||| || | || ||| || | | | Sbjct 50 GATACTCTGGTGGTCTGGAAGCTGGATAGGCTGGGACGCAGCATTAAACATTTGATTACT 109 Query 22081 CTGGTTGAGGAACTGCGCGAACGCGGCGTTAATTTTCGCAGCCTGACGGATGCTATTGAT 22140 | | ||||| || || || |||||| || |||||||||| |||||| Sbjct 110 TTAATATCCAAACTGGAAGATGAAGGTATTCATTTTCATAGTTTGACGGATGCCATTGAT 169 Query 22141 ACCAGCACGCCGATGGGGCGTTTTTTCTTTCATGTGATGGGTGCCCTGGCTGAAATGGAA 22200 || ||| | || ||||||||||||||||||||| |||| |||| | ||||| Sbjct 170 ACTTCTACGTCCGCAGGTCGTTTTTTCTTTCATGTGATGAGTGCGTTGGCACAGATGGAG 229 Query 22201 CGAGAACTCATTGTCGAGCGGACTCGGGCCGGGCTGGAAGCGGCCAGAGCCAAAGGTCGT 22260 || ||||| ||||| ||||| ||| || || | | || || ||| || ||| ||| Sbjct 230 CGGGAACTGATTGTTGAGCGTACTAAAGCAGGTTTAGCCGCAGCAAGAAGCAGAGGACGT 289 Query 22261 ATTGGTGGCAGAC 22273 || || | |||| Sbjct 290 ATCGGGTGTAGAC 302 >seq2657 Length=15264 Score = 82.4 bits (90), Expect = 1e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 135 GGGTTAAGAGTCACAGCATCTTGTAAGAAATCCGGTGCAAAGTGTGCGTAGGTCATAGTT 194 ||||| || || | |||| ||| | | | ||||| |||| ||| || || ||||||||| Sbjct 14957 GGGTTGAGGGTAATTGCATGTTGCAGGTAGTCCGGGGCAAGGTGAGCATACGTCATAGTT 15016 Query 195 TGCTGAATGTTAGAATGACCCAGGATGCGCTGCAATGTGATTATGTTACCTCCATTCATT 254 || || ||| | | || || | || |||| || | | || ||| ||||| ||||| Sbjct 15017 TGTTGTATGCTGGCGTGCCCTAATATCTGCTGTAACGCCACTAAGTTTCCTCCGTTCATC 15076 Query 255 ATAAAATGTGTGGCAAATGTATGCCTCAAAACATG 289 | |||||| |||| |||||||| | || || ||| Sbjct 15077 ACAAAATGGCTGGCGAATGTATGTCGCAGAATATG 15111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93432397257984