Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq3839 84.2 3e-11 >seq3839 Length=10135 Score = 84.2 bits (92), Expect = 3e-11 Identities = 176/256 (69%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 181380 TGATTGTTGTAGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGACTTCAAGACCA 181439 || |||||||| | ||||| |||||| | | | || | || ||||||||||| | Sbjct 1248 TGGTTGTTGTACAGATGGGTGTCACCACCGGTCCAGACAAAGTCGCCGACTTCAAGGTCG 1307 Query 181440 CATTCCAGCGCGATCAGATGTGTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCC 181499 || | | |||| |||| ||| ||| || || ||| ||| || ||||| || || || Sbjct 1308 CACTGCTGCGCCATCATATGCACCAGCAGTGCATAACTGGCAATATTGAACGGCAGACCG 1367 Query 181500 AAGAAGACGTC-CACGGACCGCTGATTCCAAA---GGCAGGACAGTTTGTCATTGCGAAC 181555 | ||| || || ||| || ||||| | ||| | ||||| |||||| ||| || Sbjct 1368 AGGAACACATCACAC-GAGCGCTGGT---AAAGCTGACAGGAAAGTTTGCCATCCGCCAC 1423 Query 181556 ATAGAACTGG-AATCCGTAGTGGCACGGCGGCAAAGCCATTAGATCGACCGCGCCGACAT 181614 ||||| ||| || || | |||||||| | || |||||| |||| | | | || || | Sbjct 1424 GTAGAATTGGAAAAACGCA-TGGCACGGTGCCAGCGCCATTTGATCTAACTCACCCACGT 1482 Query 181615 TCCAAGCCGAGACCAT 181630 |||| || || || || Sbjct 1483 TCCAGGCAGAAACAAT 1498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 661320796861440