Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq434 125 2e-24 seq3413 122 3e-23 >seq434 Length=366605 Score = 125 bits (138), Expect = 2e-24 Identities = 347/529 (66%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 40757 GTTTTCCATCAAGTAAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTG 40816 ||||| ||| | || ||| ||| |||||| ||| | || | ||||| ||||| Sbjct 159404 GTTTTGAATCTAAAAAAGTTTACATAGGTGTTTCGCCGTAACAATATCTTCCTGAATGTG 159463 Query 40817 TTCGATGGTGATTATAATACATTAACCACTCATCTAAATCCGCTTGTAATGTCGTTA--- 40873 || || ||||||| | | |||||| |||||| ||| ||| || | || Sbjct 159464 ATCTATATCGATTATATTGGAATAACCATTCATCTGCATCTCTTTGCAACTCCTCTATTG 159523 Query 40874 AATCCGTATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTAT 40933 ||| ||||||||||||||||||||| | ||||||||||| || || |||| Sbjct 159524 AAT---TATAAATTTTCTTCCTAAATGGAGTATCATAAAATTCTTGCTTCATAGTCTTAT 159580 Query 40934 GGAACCGTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTA 40993 | || | || || |||||||| || || || || |||| ||| | ||||| || | Sbjct 159581 GAAATCTCTCACAAATACCATTGGTTTGAGGTGAGTTTGCTTTAGTTGTGGTATGTTCAA 159640 Query 40994 TGTCATTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCAC 41053 | | | || |||||| | |||||| |||||||||||| | |||||||| ||| Sbjct 159641 TCCCTTCTACACTTAAATATAACTCATATGCGTGATTTTCTAAGGTTCCACAATACTCAG 159700 Query 41054 TTCCTCGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATG--GTAA 41111 | |||| || ||||||| | || || || | || | |||| | | |||| Sbjct 159701 TCCCTCTATCTGTTAATACTCTCAATATATCTACATTATGTTCTGTAAAGAAAGGTGTAA 159760 Query 41112 CACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGC 41171 ||| |||||||| || |||||| | | |||| || || ||||| || || | Sbjct 159761 CAC--AATCATTCAATATTTCCGCACTAGTCATAGGTGTTTTATCAGTATAGAGCTTAGA 159818 Query 41172 AAACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTT 41231 ||||| || |||||||||| |||||| ||||| || || |||||||| Sbjct 159819 TTCTGCCACACGCGAATATGTATCAATAACCGTTTGCTGATAGATCTTGCCAACTCCTTT 159878 Query 41232 GAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGT 41280 | | || || || | |||||||| | |||||| || || ||| Sbjct 159879 AATAGTACCTACGTAATATGTATCTTGAGCTATAAGATAACCTGGATGT 159927 >seq3413 Length=1126 Score = 122 bits (134), Expect = 3e-23 Identities = 251/367 (68%), Gaps = 15/367 (4%) Strand=Plus/Plus Query 35086 ATACGCTCTGCTTCGTCTTGGTCGTAAATACCCGTAAAGCCAAAGGCTAATCTTGCACAT 35145 || |||||||||||||| ||||||||| || | ||| ||||| || | | |||||| Sbjct 634 ATCCGCTCTGCTTCGTCGCTGTCGTAAATGCCAGCAAACCCAAATGCCATGCGTGCACAC 693 Query 35146 TGGATCATTGCTTTATGGCGTAACATTCTTTTTGGGTGAGAGTTCCA-AGCTGG--AGAG 35202 || |||| || || ||||| | ||| | | ||||| || | ||| ||||| | | Sbjct 694 TGAATCAGTGACTTGTGGCGCAGCATACGGGTGGGGTGTGATTGCCACGGCTGGGTATTG 753 Query 35203 CTCTTTTTACATTCCCCCATAAATTCCGTCACCACAATCGGTTTACTTCTATCTTTACGG 35262 | | | ||| || ||||| |||| || || ||| | || | | | |||||||||| Sbjct 754 CGC---TCACACTCGCCCATGTATTCGGTGACTACAGTGGGGTGTTTGCGATCTTTACGG 810 Query 35263 TAGATAGTACAAGTACAGGCGGAATAGTC---ATCGGTAAAATGAAATTCCATTCCATCA 35319 || || | ||||| | ||| | ||| |||| | || |||||||| ||||| Sbjct 811 TAAATCCTGCAAGTCGATGCGCCCTCGTCCTTATCG--TAGCTG-AATTCCATGCCATCG 867 Query 35320 TATTGAGGCTCACGGTTAATAATGCGAACCCAACCATCAACGCCGACAATAGGCGTTAAT 35379 |||| || | |||||| || || |||| ||||| || ||||||| || | Sbjct 868 AATTGCGGATGTTCGTTAATGATCCGCGCCCATCCATCGACACCGACAACCGGAACAATC 927 Query 35380 CCACCGTTCCCACCGGGGAATGCATAAATTTCTTTTGTCCAAGGGTTTAATTGGTATTGG 35439 || || || || || || || ||||||||||||||||| ||||| | | ||| ||| Sbjct 928 CCGCCCTTGTCA---GGAAAGGCGTAAATTTCTTTTGTCCACGGGTTGAGTCCGTACTGG 984 Query 35440 TTAGCAA 35446 || |||| Sbjct 985 TTGGCAA 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166715344002816