Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq3842 271 1e-68 seq2298 120 6e-23 seq3690 118 2e-22 >seq3842 Length=22882 Score = 271 bits (300), Expect = 1e-68 Identities = 732/1113 (66%), Gaps = 42/1113 (4%) Strand=Plus/Plus Query 26921 TGACTGGCGTGAACAAAAGCGCCGCACTCGTGAATTTCTCAAAGGTCTGGATCTCGAAGA 26980 |||||||| || || ||| ||||| || | | |||| | ||||||| ||||| Sbjct 6306 TGACTGGCACGAGCAGCGGCGGCGCACCAACGAGTGGCGCAAAAGCATGGATCTGGAAGA 6365 Query 26981 CGAAGACGGCAACCGTATCAGCCTGATTGAAAAATTTGACGGCTCGGTC--GCTAACCCT 27038 |||||| |||||||| |||| |||||| || | || | || | ||| || || || Sbjct 6366 CGAAGAGGGCAACCGCATCAACCTGATGGACGGCTATG-CTGC-CAGTCAGGCCAATCCC 6423 Query 27039 GCGATACGCCGCTGCGAGCTGATGACCCGCATCCGTGGGTTTGAAAATATCTGCAATGAA 27098 || || || || || |||||| ||||| || |||| |||| ||||| ||||| Sbjct 6424 GCCATCCGGCGTACTGAACTGATGGTACGCATTCGGGGGTATGAAGATATCGCCAATGCT 6483 Query 27099 CTCGGATACGTCGGGGAGTTTTACACCCTGACCGCACCGTCTAAATATCACGCCACGACT 27158 | || || || || || ||| ||| | ||||| || || | |||||| |||| || Sbjct 6484 CAGGGTTATGTTGGCGAATTTGTGACCATCACCGCCCCCTCAAGCTATCACTCCAC--CT 6541 Query 27159 ---AAAGCGGGATACCGTAACAGCAAATGGAACGGAGCCAGCCCGTCGGACACGCAGAGC 27215 |||||||| | |||| | ||||||||||| ||| ||||| ||| || |||||| Sbjct 6542 TGGAAAGCGGGCGCAC-TAACCGGAAATGGAACGGTGCCTGCCCGAAGGAGACCCAGAGC 6600 Query 27216 TACCTAACCGGCCTTTGGGCGCGCATTCGTGCCAAGCTACATCGGGAAGAAATTCGCATT 27275 || || | | | ||||| ||| || ||||| || || ||| | ||| || Sbjct 6601 TATCTCAATGATGTATGGGCCCGCGCCCGCGCCAAATGCCACCGCCAAGGGCTGCGCGTT 6660 Query 27276 TTCGGCATACGTGTTGCCGAGCCTCATCACGACGGAACGCCGCATTGGCACATGCTTATG 27335 || || || || ||||| ||||| || || ||||| ||||| ||| || || | || Sbjct 6661 TTTGGTATGCGGGTTGCTGAGCCACACCATGACGGCACGCCACATGCCCATTTGTTGGTG 6720 Query 27336 TTCATGTTGCCAGAAGACGTCGAGCGCGTGCGCCTCATCATCCGCGATTATGCATGGGAG 27395 || || ||||| | || ||| | || ||| | ||||| ||||| || | Sbjct 6721 TTTGCCCGCCCGGAAGAGATGGATCGCATTCGGGACATTCTGCGCGAGTATGCCATGGCG 6780 Query 27396 GAAGACCGCCACGAACTTAAAAGTGATAAGGCTAAAAAAGCCCGCTTTCATGCTGAGGCT 27455 |||||| || | || | |||| || ||| ||||| ||| | || | || Sbjct 6781 GAAGACGGCGAGGAGTTACGGAGTGCCGCCGCGGCAAACGCCCGGTTTGACGCAAAAGCC 6840 Query 27456 ATCGACCCGGAGAAAGGCAGTGCTACCGGTTATGTCGCGAAATACATTTCTAAAAACATC 27515 ||||| || || |||||||| || ||||| |||||||||||||||||||| ||||| || Sbjct 6841 ATCGATCCAGAAAAAGGCAGCGCCACCGGGTATGTCGCGAAATACATTTCGAAAAATATT 6900 Query 27516 GACGGTTATGCTCTCGATGACGAAACNNNNNNNNNNNNNNNNNNACTGCTAAAAGAGACG 27575 || || ||||| || || | ||||| | | |||| || Sbjct 6901 GATGGCTATGCCCTAGACGGTGAAACCGACGACGAAAGCGGCAAGCCGTTAAAGGA---- 6956 Query 27576 GCACCCGC--CGT--TTCAGCATGGGCGGCTCGCTGGCATATCCGTCAGTTTCAGTTTAT 27631 ||| ||| ||| | | || |||||| | | |||| || || |||||||||||||| Sbjct 6957 TCACGCGCAGCGTGCTACCGCCTGGGCGTCGCTCTGGGGCATTCGCCAGTTTCAGTTTAT 7016 Query 27632 CGGCGGTGCTCCTGTGACGGTATATAGGGAGCTTCGAAAAATGGCTGACCCAGAAACGGC 27691 |||| | | ||| |||||||| | ||||| | || || |||| ||||| || Sbjct 7017 CGGCAGCGTTCCGGTGACGGTGTGGCGGGAGTTGCGCCGGCTGAATGACAGTGAAACCGC 7076 Query 27692 AAGGGCGCTTAGTGTTGAATTCGCCGAAGTACATGACGCCGCTCATTATG-GCCG--CTG 27748 | | || || || || || |||| || || || || || ||| |||| ||| Sbjct 7077 CCGCGGCCTGAGCGTGGAGTTTGCCGCCTGTCACGAGGCGGC-CA--ATGCGCCGGACTG 7133 Query 27749 GGCTGACTATGTTAACGCTCAGGGTGGGCCTTTCGTCCGTCGGGACGAATTACAGGTGCG 27808 ||| || ||||| || || ||||| ||||| | ||| || || || || |||||| Sbjct 7134 GGCCGAGTATGTCAATGCCCAGGGCGGGCCACTGGTCAAACGTGATGATTTGGCGGTGCG 7193 Query 27809 CACTCTTTACGAGCCGCGAACAGAG---CTTAATCAGTATGGTGAGGAAATAGTCTGTAT 27865 ||| || |||| ||||||| || |||||||| ||||| ||||| | |||| Sbjct 7194 CACCTGGTATCAGCC---AACAGAGGTACTGAATCAGTACGGTGAAGAAATTCTGAGTAT 7250 Query 27866 CAAAGGTGTGTACGATTCCACCATTGGTGCAGGCACTCCGATTTTAACCCGGCTTACGCA 27925 | || ||| ||| | |||| | || | ||||| | |||||| | | ||| Sbjct 7251 CCGTGGGCTGTTTGATACGGTGGTTGGCGAGGGTTCGCCGATCCTGACCCGGTTGAAGCA 7310 Query 27926 GTGGAAAATTGTTCCGAAGCGTGCCGTTGATTTGGCCGTTGACGTTAAGGGCGCTCCTGC 27985 |||||| ||||| |||||| ||||||||||| || | ||| ||| Sbjct 7311 GTGGAAGATTGTGCCGAAG------------TTGGCCGTTGATGTGAGCAACGCGGATGC 7358 Query 27986 GCCCTCTCGGAGTTCTGTCAATAACTGTACGGG 28018 | |||||| | |||||||||||||||||| Sbjct 7359 GTTGCCTCGGACTCGTGTCAATAACTGTACGGG 7391 Score = 172 bits (190), Expect = 1e-38 Identities = 279/398 (70%), Gaps = 10/398 (3%) Strand=Plus/Plus Query 9458 TATCACCCTCGACACCCCGGAGGTGGTATGCACCAACAAACTGACGACGGCGACGCTTGA 9517 ||||| ||| || || ||||| ||| | || |||||||| |||||||| | ||||| || Sbjct 19795 TATCATCCTAGATACGCCGGAAGTGATTTGTACCAACAAGCTGACGACAGGCACGCTGGA 19854 Query 9518 GGTGCAGAAAGGCGGCGCCATGCGGGGAAACATCGAACATACCGGTGGCACGTTGAAATC 9577 ||||| |||||||| | |||| || ||||| | ||| | ||| ||| |||| | || Sbjct 19855 AGTGCAAAAAGGCGGAGAAATGCACGGCAACATTGCACACAGCGGCGGCGCGTTCACCTC 19914 Query 9578 AAACGGCGTGCAGGTCGATAACCACGGTCACGGCGGCGTACAACGGGGCGGGAACTGGAC 9637 |||||||||||| | || || ||||| || |||| ||||| | || || | ||||| Sbjct 19915 CAACGGCGTGCAGATTGACAATCACGGCCATGGCGCAGTACAGCACGGTGGCAGTTGGAC 19974 Query 9638 GGAGGGCACAAAATGACAGCGCGTTATCTGGGGATGAACCGCAATACCGGCATAGGTATC 9697 ||||||||| || ||| ||||||||| || ||||||| | | |||| | || | Sbjct 19975 GGAGGGCACCAAGTGAGCGCGCGTTATACCGGCATGAACCCCGA---CGGCGTTGGCGT- 20030 Query 9698 AGTGACAGTGAGCATATCAGCCAGAGCA-----TGCGCGACATTCTGCTGACGCCGGTCG 9752 | |||| | | | ||||| | ||| |||||||||||||| || ||| | | Sbjct 20031 ACTGACGGATA-CCGATCAGTTATGGCATTCCGTGCGCGACATTCTGACCACACCGCTGG 20089 Query 9753 GCTCGCGGGTAATGCGTCGTGAATATGGCTCGCTCCTGTCTGCGTTGATTGATATGCCGC 9812 || || || ||||| |||||||| ||| || || ||| ||| | ||| ||||| Sbjct 20090 CGTCCCGCGTCATGCGCCGTGAATACGGCAGTCTGGTGCCTGACTTGCTGGATGCGCCGC 20149 Query 9813 AAAACCCGGCGCTCAGGCTGCAAATCATGGTGGCGTGC 9850 | ||| | || | |||||| | ||| |||||| Sbjct 20150 AGAACGCCGCAACACGACTGCAATTGATGAGCGCGTGC 20187 Score = 113 bits (124), Expect = 9e-21 Identities = 271/410 (66%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 11698 GGCGGCTTCTGGATGCGTGAGCTTGGCCTTTACGACGATGAAGGGACGCTGATTGCTGTT 11757 || || |||||||| ||||| | ||||| | || | |||||| | ||||||| ||| Sbjct 22085 GGGGGATTCTGGATACGTGAAATCGGCCTGTTTGATGCTGAAGGTAATTTGATTGCGGTT 22144 Query 11758 GCCAATATGGCCGAAAGCTACAAGCCAGAACTGGCTGAGGGCTCAGGGCGTGCGCAGACA 11817 ||||| ||||||| ||| ||||| || || || ||| || ||| ||||| Sbjct 22145 GCCAACTGCGCCGAAACCTATAAGCCGCAATTGCAGGAAGGCAGCGGACGTATTCAGACC 22204 Query 11818 TGCCGCATGGTCATTATTGTCAGCAGTGTCGAGTCTGTGGCGCTGTCCATTGACTCAACG 11877 |||||| | | |||||| ||| || | || |||| ||||| | || Sbjct 22205 GTGCGCATGATTTTGATTGTCTCCAGCACAGAAACAGTATCGCTTAAAATTGATCCGGCG 22264 Query 11878 ATGGTGATGGCGACGCAGGATTATGTCGACGACAGGCTCGCCGAACATGAAAAATCCCGT 11937 ||||| |||| |||| | ||||| || || |||| ||||||||| |||| Sbjct 22265 GTGGTGCTGGCAACGCGTGGCTATGTGGATGATGCTATCGCTACGCATGAAAAAAGCCGT 22324 Query 11938 CGTCATCCTGATGCCACTCTTAAAGAAAAAGGGTTTACTCAGCTCAGTAACGCGACTGAC 11997 ||||| || || || ||| | | |||||| ||| || | || || || || ||| Sbjct 22325 AAACATCCAGACGCAACGCTTGAGGCAAAAGGCTTTGTGCAATTGAGCAATGCCACGGAC 22384 Query 11998 AGCGAGTCTGAAACGCTCGCAGCGACGCCGAAAGCTGTTAAGGCAGCATATGATCTTGCT 12057 || | |||| || | || || ||||||||||| || || || | ||||| || || Sbjct 22385 AGTGCCAGTGAAGCGATGGCGGCAACGCCGAAAGCAGTGAAAACAACCTATGACCTCGCC 22444 Query 12058 GACGCGAAATATACGGCTCAGGACGCCACCACAACGCGTAAAGGGATTGT 12107 || |||||| | || ||||| || | ||| | || || || ||||| Sbjct 22445 AGCGGGAAATACTCAGCACAGGATGCGAGCACTAGGCAAAAGGGCATTGT 22494 >seq2298 Length=2172 Score = 120 bits (132), Expect = 6e-23 Identities = 182/259 (70%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 23603 CATGTTTGATTTTCAGATTTCCAAACATCCACACTATGACGAAGCGTGCCGGGCTTTTGC 23662 ||||||||||| ||| ||||||| ||||||||||| |||| || || | ||| || || Sbjct 1679 CATGTTTGATTATCAAATTTCCATACATCCACACTTTGACCGCGCCTGTCAGGCGTTCGC 1738 Query 23663 GCAGCGTCACAACATGGCGAAGCTGGCCGAGCGTGCGGGTATGAACGTTCAAACGTTACG 23722 | ||||| |||||||| |||||| || | ||| ||||| ||| || ||||| Sbjct 1739 GTTAAAGCACAATCTGGCGAAGTTGGCCGGGCAGGTGGGGATGAATCATCAGACCTTACG 1798 Query 23723 TAACAAGCTCAACCCGGAACAACCTCACCAGTTCACGCCGCCTGAATTGTGGCTGCTGAC 23782 ||||||||| || || || || || ||| || | || ||| | | || || Sbjct 1799 TAACAAGCTGAATCCAGACCAGCCGCACAAGCTGACCTGTGACGAACTAATGACCCTCAC 1858 Query 23783 TGACCTGACCGAAGACTCAACCCTCGTTGATGGTTTTCTGGCGCAGATTCATTGCCTGCC 23842 || | ||||||||| | || || | ||||| || |||||||| || |||| ||||| Sbjct 1859 CGATGTAACCGAAGACGCCACGCTGATCGATGGGCTTTTGGCGCAGCTTAATTGTCTGCC 1918 Query 23843 ATGCGTGCCGGTTAATGAG 23861 | || ||| || || ||| Sbjct 1919 AGCCGAGCCAGTAAACGAG 1937 >seq3690 Length=4460 Score = 118 bits (130), Expect = 2e-22 Identities = 193/278 (69%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 13159 GCATTTAACTACATAGTGAGGCTGGCATAATGACTTTTAAAATGAGCAGCAAAGCGCAGA 13218 || ||||| || ||||||||||| |||||||| |||| |||| ||| |||| | | Sbjct 2830 GCTTTTAATTATATAGTGAGGCTTGCATAATGGATTTTGAAATATCCAGTGAAGCAAAAA 2889 Query 13219 CAATTAAAATTTTCAATCTGCGTTCAGATACTAACGAATTTATTGGTGCGGGCGATGCGT 13278 | ||||| |||| ||||| | | ||||| || |||||||||||||| || ||||| | Sbjct 2890 CCATTAAGATTTATAATCTCCACGCTGATACAAAGGAATTTATTGGTGCTGGAGATGCTT 2949 Query 13279 ATATCCCGCCGCACACTGGATTACCGGCTAATTGTACTGATGTCGCCCCTCCTGAAATTC 13338 |||| || || ||||| || |||||||| ||||| ||| || || ||||| | Sbjct 2950 ATATTCCACCTCACACAGGGTTACCGGCACTCTGTACAACAACCGCACCACCAGAAATCC 3009 Query 13339 CGACCAGCCATATTGCGATATTTGATGCTGAAACACAGACGTGGACTCTGCATGAAGACC 13398 | | |||| |||| | ||| | | || ||||| ||| | | ||||| | Sbjct 3010 TGGTCGACCATGTTGCTGTTTTTAACGTGCAAGAACAGATTTGGGTACAGGTAGAAGATC 3069 Query 13399 ACAGAGGTAAAGCGGTTTATGACACAACAACCGGTAAT 13436 | |||| || | || ||||||| ||| || || ||| Sbjct 3070 ATCGAGGAGAAACTGTCTATGACAAAACGACAGGGAAT 3107 Score = 89.7 bits (98), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 12658 TGGCCGTCTGACACTATCCCTGCCGGTTATGCCCTGATGCAGGGGCAGGTATTTGATAAG 12717 |||||||| || | ||| || || || ||||||||||||||||| ||| ||||||| Sbjct 2327 TGGCCGTCGGATAATATTCCCGCAGGCTATGCCCTGATGCAGGGCCAGACTTTTGATA-- 2384 Query 12718 AACGTTTAT-CCCTTACTGGCAATAGCATATCCATCCGGCACTATTCCGGACATGCGAGG 12776 || || || ||| ||||| |||| |||||||| || | ||||| || ||||| || Sbjct 2385 AAAGTAAATACCCAAGCTGGCTATAGTTTATCCATCAGGGATCATTCCTGATATGCGTGG 2444 Query 12777 CTGGACAATCAAAGGTAAGCCTG 12799 ||| || |||||||| |||| Sbjct 2445 TCAGACCATAAAAGGTAAACCTG 2467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95019522469120