Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq2300 102 4e-17 >seq2300 Length=16383 Score = 102 bits (112), Expect = 4e-17 Identities = 382/588 (65%), Gaps = 17/588 (3%) Strand=Plus/Minus Query 66156 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCC 66215 || ||||||||||| |||||||| ||||| || | || || || || | | ||| Sbjct 15222 GTTGAAATCTACGGACCAGAATCGTCAGGTAAAACCACACTAACGCTGCAAGTTATCGCC 15163 Query 66216 AATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTGGACCCT 66275 ||| ||| | ||| | | || | ||||| ||||| || | || || || Sbjct 15162 GCTGCACAGCGTGAAGGTAAAACCTGCGCATTTATCGATGCTGAACATGCACTCGATCCG 15103 Query 66276 GAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT-TCAGCCGGACAC 66334 || ||||| || ||||| ||| |||| ||||| || || | |||||| || || Sbjct 15102 ATTTATGCCAAAAAACTGGGTGTCGACATCGATAACCTGCTG-TGTTCTCAGCCTGATAC 15044 Query 66335 TGGCGAGCAGGCCCTGGAGATCGTTGACCTCC-TCGTCAAGT-CTGGCGAGCTGTCCATC 66392 ||||||||||| | ||||| ||| | | | | | || | |||| | | | | Sbjct 15043 CGGCGAGCAGGCGTTAGAGAT--TTGCGATGCGTTGACGCGTTCAGGCGCGGTTGACGTG 14986 Query 66393 GTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGG 66452 || |||||||||| |||||||| ||| ||| || || ||||||| || ||||| Sbjct 14985 ATCATCGTTGACTCCGTGGCGGCACTGACGCCAAAAGCGGAAATCGAAGGTGAAATCGGT 14926 Query 66453 GACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGC 66512 || ||| | || ||| || ||| | ||| ||||| ||||| ||||| |||| Sbjct 14925 GATTCCCACATGGGGCTGGCGGCTCGCATGATGAGTCAGGCGATGCGTAAGCTGGCCGGT 14866 Query 66513 ACCATCTCCAGCA--CCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCG 66570 | | | |||| | || |||||| | | | |||||||| | || ||| || | Sbjct 14865 AACTTGA--AGCAGGCGAATACGCTGCTGATTTTTATCAACCAGATCCGTATGAAAATTG 14808 Query 66571 GCA--ACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTA 66628 || | || | || |||| || ||||||||||| || || || ||| ||| || Sbjct 14807 GCGTTATGTTTGGTAA--CCCG---GAAACCACCACGGGGGGGAACGCGCTGAAGTTTTA 14753 Query 66629 CGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGT 66688 || || || || | ||| | || ||||| | | || || || || || || | || Sbjct 14752 TGCTTCTGTACGTCTCGATATTCGCCGCATTGGCTCCATTAAAGATGGAGAAGAAGTGGT 14693 Query 66689 CGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66736 |||| | ||||| ||||| || || || ||||| |||| |||| Sbjct 14692 GGGCAGCGAAACCCGCGTGAAAGTGGTGAAAAACAAAGTGGCTGCGCC 14645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240948347174400