Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq3532 172 6e-38 seq3176 125 8e-24 seq2351 107 2e-18 >seq3532 Length=11862 Score = 172 bits (190), Expect = 6e-38 Identities = 143/175 (82%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 123123 CAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATCCA 123182 ||||| |||||||| ||||||||||| |||||||| || |||||||| || || || || Sbjct 11323 CAACACCTGAACGTGAACGTTCTGCGCCGTGAAACGCTGGAAGATGCGGTAAAACACCCG 11264 Query 123183 GAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTCTG 123242 |||||||| |||||| ||||||||||||| |||||||||||||| || || ||||| || Sbjct 11263 GAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGTTATGCAGTGCGTTTCAACTCATTG 11204 Query 123243 ACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACTGAGAGTCTATAAT 123297 || || |||||||| || ||||| || | || || || ||||| || || |||| Sbjct 11203 ACCCCAGAACAGCAACGTGACGTGATTACGCGTACTTTCACTGAAAGCCTGTAAT 11149 >seq3176 Length=18404 Score = 125 bits (138), Expect = 8e-24 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180 ||||||| |||||||| ||||| || ||||||| || ||||| | | || | Sbjct 6490 GTCAACACCTGAACGTGAACGTGATGAACCGTGAAATGCTGTTGGATGCCATGGAACACC 6431 Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240 | ||||||||||||||| ||||||||||||| ||||||||||| || ||||| ||||| | Sbjct 6430 CGGAAAAATATCCGCAGTTGACCATCCGTGTTTCTGGTTATGCCGTGCGCTTCAACTCGC 6371 Query 123241 TGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACTGAG 123287 |||| |||||||||| |||||||| | || || || ||| || Sbjct 6370 TGACCAAAGAACAGCAGCAAGACGTTATTACCCGTACTTTCACTCAG 6324 >seq2351 Length=10305 Score = 107 bits (118), Expect = 2e-18 Identities = 286/431 (66%), Gaps = 12/431 (3%) Strand=Plus/Plus Query 41873 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCAACCCCAATTATGGCAGG 41931 || || ||||| || ||||||| | ||||| ||||||||||||| || || ||| | || Sbjct 2550 CGCTTCTATGACGCGATTTCTAC-CTTCAAGATTTCATTGCCAACGCCGATCATGTCCGG 2608 Query 41932 TGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 41991 | ||||| || || || |||||| || || | ||||| ||| || | Sbjct 2609 CGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTGTTGATTGAGTGCGGCGACAGCCT 2668 Query 41992 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 42051 | || |||||| || || | || | |||| |||| | || || ||||| Sbjct 2669 GGATTCCATTAACGCCACCTCCAGTGCTATCGTGAAATACGTTTCACAGCGTGCCGGTAT 2728 Query 42052 CGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGAT---CGGTATGGGTGAAG- 42107 ||| || |||| ||| ||||||| ||| ||| |||| ||||||| Sbjct 2729 CGGCATTAACGCCGGTCGTATTCGTGCGCTGGGTAGCCCGATTCGCGGT---GGTGAAGC 2785 Query 42108 -TTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGT 42166 ||| ||||| || |||||| |||| ||||||||||| || ||||| ||||| || Sbjct 2786 ATTC--CATACTGGCTGTATTCCTTTCTATAAACATTTCCAGACCGCAGTGAAATCCTGC 2843 Query 42167 TCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAA 42226 || || || ||| | || || || || || || || ||| ||| ||||||| | ||| Sbjct 2844 TCACAGGGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTTTACCCGCTGTGGCATCTGGAA 2903 Query 42227 GTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACAT 42286 || || | ||| | || ||||| || ||| |||||||| | ||||| | || || Sbjct 2904 GTGGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGCGTGGAAGGCAACCGCGTGCGTCAC 2963 Query 42287 ATGGACTACGG 42297 | || ||||| Sbjct 2964 CTCGATTACGG 2974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539912419015680