Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq10 87.8 2e-12 >seq10 Length=2352850 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| |||||| || ||||||||||| | ||| |||| | || || ||||| Sbjct 819637 TGAAGGGTGGACTCTTTCTGAATATTATAATCAGAAAGGGTTCTGCCATCCTCGAGCTGC 819578 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || ||||| |||||||| | || | | |||||||||| ||| || Sbjct 819577 TTACCAGCGAAGATCAGACGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTG 819518 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 ||||| | | | || || | ||| || |||| ||||| | ||||| ||| Sbjct 819517 GCTTTGACATTTTCAATTGTGTCAGAGGCCTCGACCTCCAGGGTGATGGTCTTTCCAGTC 819458 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 | ||| || || ||||| ||||| Sbjct 819457 AACGTCTTCACGAAGATCTGCAT 819435 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| |||||| || ||||||||||| | ||| |||| | || || ||||| Sbjct 818953 TGAAGGGTGGACTCTTTCTGAATATTATAATCAGAAAGGGTTCTGCCATCCTCGAGCTGC 818894 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || ||||| |||||||| | || | | |||||||||| ||| || Sbjct 818893 TTACCAGCGAAGATCAGACGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTG 818834 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 ||||| | | | || || | ||| || |||| ||| || | || || ||| Sbjct 818833 GCTTTGACATTTTCAATTGTGTCAGAAGCCTCAACCTCCAACGTAATGGTCTTGCCAGTC 818774 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || ||||| ||||| Sbjct 818773 AAGGTTTTCACGAAGATCTGCAT 818751 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| |||||| || ||||||||||| | ||| |||| | || || ||||| Sbjct 819181 TGAAGGGTGGACTCTTTCTGAATATTATAATCAGAAAGGGTTCTGCCATCCTCGAGCTGC 819122 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || | ||| |||||||| | || | | |||||||||| ||| || Sbjct 819121 TTACCAGCGAAGATCAAACGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTG 819062 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 ||||| | | | || || | ||| || |||| ||||| | ||||| ||| Sbjct 819061 GCTTTGACATTTTCAATTGTGTCAGAGGCCTCGACCTCCAGGGTGATGGTCTTTCCAGTC 819002 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 | ||| || || ||||| ||||| Sbjct 819001 AACGTCTTCACGAAGATCTGCAT 818979 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| |||||| || ||||||||||| | ||| |||| | || || ||||| Sbjct 819409 TGAAGGGTGGACTCTTTCTGAATATTATAATCAGAAAGGGTTCTGCCATCCTCGAGCTGC 819350 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || | ||| |||||||| | || | | |||||||||| ||| || Sbjct 819349 TTACCAGCGAAGATCAAACGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTG 819290 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 ||||| | | | || || | ||| || |||| ||||| | ||||| ||| Sbjct 819289 GCTTTGACATTTTCAATTGTGTCAGAGGCCTCGACCTCCAGGGTGATGGTCTTTCCAGTC 819230 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 | ||| || || ||||| ||||| Sbjct 819229 AACGTCTTCACGAAGATCTGCAT 819207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429524827174784