Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq10 150 1e-31 seq14 89.7 3e-13 seq676 86.0 4e-12 >seq10 Length=2352850 Score = 150 bits (166), Expect = 1e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| ||||| || | || || ||||| ||||| || ||||| || | | Sbjct 819890 AATGCAGATTTTTGTTAAGACATTGACTGGCAAAACCATCACCCTGGAAGTCGAAGCATC 819949 Query 23670 GGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| ||| |||| ||||| | |||||| || ||||||||| | || ||||||| Sbjct 819950 TGACACTATTGAAAATGTTAAAGC-TAAAATTCAAGATAAAGAAGGTATCCCACCAGATC 820008 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||||| || || || || |||||| |||| |||| | | ||| | || |||| Sbjct 820009 AACAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGACGGAAGAACTCTTTCAGACTACA 820068 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| |||||||||||||| | ||| | ||| | | | ||||||||| Sbjct 820069 ACATTCAAAAAGAGTCCACCCTCCATCTCGTTCTTCGTCTTCGAGGAGGA 820118 Score = 141 bits (156), Expect = 6e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| |||||||| || || || || ||||| |||||||| || || | Sbjct 821030 AATGCAGATTTTCGTCAAAACCCTAACTGGCAAGACCATCACACTCGAAGTAGAGGCCTC 821089 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | || ||||| ||||| || || | || |||||||| Sbjct 821090 TGACACAATTGAAAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCTCCAGATCA 821149 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || |||||||||||||| | | ||||| ||| ||||| Sbjct 821150 ACAGCGTTTGATCTTTGCTGGTAAACAACTGGAAGATGGTAGAACTTTGTCCGACTACAA 821209 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || ||||| || ||| | || || ||| Sbjct 821210 CATCCAGAAAGAATCTACACTCCACTTGGTT 821240 Score = 104 bits (114), Expect = 2e-17 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || |||||||||||||| |||||||| || ||||| || || | Sbjct 820346 AATGCAGATATTCGTGAAGACCCTCACGGGAAAGACGATCACCCTAGAAGTCGAAGCCTC 820405 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | || || || || || || || | || ||||| || Sbjct 820406 TGACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCA 820465 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGATT 23785 |||||||| || || || || ||||| |||| || |||| | || | |||| Sbjct 820466 GCAGCGTTTGATCTTCGCTGGTAAACAGTTGGAGGATGGGAGAACACTCTCT----GATT 820521 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || || ||||||||||| | ||| | ||| | | | ||||||||| Sbjct 820522 ACAATATCCAGAAAGAGTCCACTCTCCATCTTGTTCTTCGTCTTCGAGGAGGA 820574 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || || || ||||| || ||||| || || | Sbjct 820803 ATGCAGATCTTTGTAAAGACATTGACTGGGAAGACCATCACACTGGAAGTAGAGGCCTCT 820862 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | ||| || || |||||||| || | || ||||| || Sbjct 820863 GACACTATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATTCCCCCAGACCAG 820922 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG----AACGCACTTTAGGCGATTA 23786 |||||||| || || || || |||||| |||| || | ||| | || | ||||| Sbjct 820923 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGGAGAACACTCTCT----GATTA 820978 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || ||||||||||| | ||| | ||| | | | ||||||||| Sbjct 820979 CAATATCCAGAAAGAGTCCACTCTCCATCTTGTTCTTCGTCTTCGAGGAGGA 821030 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| | || || || || ||||| || ||||| || | | Sbjct 820118 AATGCAGATTTTCGTGAAAACTTTGACTGGTAAGACTATCACACTTGAAGTGGAGGCATC 820177 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || || || ||||| || || | || ||||| || Sbjct 820178 TGACACGATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 820237 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || || |||||||||||||| | | ||| | || ||||| Sbjct 820238 GCAGCGTTTGATCTTCGCTGGTAAACAACTGGAAGATGGCAGAACTCTGTCAGACTACAA 820297 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| || ||| | || || || | | || |||||||| Sbjct 820298 CATCCAGAAAGAATCAACACTCCACTTGGTCCTGCGTCTGAGAGGAGGA 820346 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || || || || || || ||||| |||||||| || || | Sbjct 820574 AATGCAGATTTTTGTCAAGACTCTGACTGGCAAGACCATCACACTCGAAGTAGAGGCCTC 820633 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | || || || || ||||| || | || ||||| || Sbjct 820634 TGACACAATTGAAAACGTCAAGGCGAAGATCCAGGATAAAGAGGGAATTCCTCCAGACCA 820693 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || || || || |||||| ||||||| | | ||| | || ||||| Sbjct 820694 ACAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCAGGACTCTCTCAGACTACAA 820753 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 820754 CATCCAGAAGGAATCCAC 820771 >seq14 Length=2234412 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| || || || || ||||| ||||| || || | Sbjct 1933395 AACATGCAGATCTTCGTAAAAACCCTAACTGGGAAGACCATCACCCTCGAGGTGGAGGCT 1933454 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | |||| || ||||| || || | || ||||| Sbjct 1933455 TCTGACACAATCGAGAATGTCAAAGCCAAAA-TTCAGGACAAGGAGGGCATTCCCCCAGA 1933513 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || || || || ||||| || || || | |||||| | ||||| Sbjct 1933514 CCAGCAGAGGCTGATTTTCGCTGGTAAACAGCTCGAGGATGGACGCACCCTGTCTGATTA 1933573 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| || || || || ||| | || || || | || || || || || Sbjct 1933574 CAACATTCAGAAGGAATCGACACTTCACTTGGTACTCAGATTACGTGGTGG 1933624 >seq676 Length=265522 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| ||||| || ||||| || || ||||| ||||| || || || Sbjct 178557 AAAATGCAGATATTCGTGAAAACGCTGACGGGCAAGACCATCACCCTCGAGGTCGAGGCC 178498 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | || | | || ||| || || || || || | || ||||| Sbjct 178497 TCTGATACCATCGAGAACGTGAAGGCAAAGATCCAGGATAAGGAGGGAATTCCCCCAGAC 178438 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || || || || |||||| ||||||||| |||||| | |||||| Sbjct 178437 CAGCAGAGACTGATCTTCGCTGGAAAACAATTGGAAGACGGTCGCACTCTTTCTGATTAC 178378 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || || || || Sbjct 178377 AACATCCAGAAGGAATCTAC 178358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337993253855744