Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_030918.1 Length=36629 Score E Sequences producing significant alignments: (Bits) Value seq3688 134 3e-27 seq3855 125 2e-24 seq1892 111 4e-20 >seq3688 Length=22785 Score = 134 bits (148), Expect = 3e-27 Identities = 595/919 (65%), Gaps = 41/919 (4%) Strand=Plus/Plus Query 14702 CATCCTGGTCGAGGCCGAACAGGGCAACCTCCAAGCCCAGGCCGAATTGTTCATGGACAT 14761 ||||||| ||||||||| ||||| |||| ||||| || |||| | || || Sbjct 7970 CATCCTGAGCGAGGCCGAGCAGGGGCACCTGGTGCGTCAGGCTGACCTGTTTTTTGATAT 8029 Query 14762 GGAGGAACGCGACGCCCACCTGTTCGCCGAAATGAGCAAGCGAAAGCGCGCAATCCTTG- 14820 |||||| ||||||| |||||| || ||||| ||||||||||| ||| | || || Sbjct 8030 GGAGGAGCGCGACGGCCACCTTTTTGCCGAGATGAGCAAGCGC---CGC-CGTTCGGTGA 8085 Query 14821 -GCCTGG-ATTGGGCGG-TCGAGCCCCCGCGTAACGCCTCGGCGGCCGAGAAAGCCGATG 14877 ||| | |||| | | ||| |||||| | || ||| || |||| ||||| Sbjct 8086 TGCCGCTCACCTGGCGCATTGTGCCGCCGCGTCATCCCAATGCGCAGGA-AAAGGCGATG 8144 Query 14878 CCG-ACTACTTGCACGAGCTATTGCTCGACCTGGAAGGGCTGGAGGACTTGCTGCTCGAT 14936 || || | | ||| || |||||| | | | || ||||| |||| Sbjct 8145 GCGGACGCCGCGACCGAATGGTTTTCAGACCTGCCGGAGTTTGAAACGCTGCTGTTCGAC 8204 Query 14937 GCGCTGGACGGCATCGGCCACGGCTACAGCTGCATTGAGCTGGAGTGGGCGCTACAGGGG 14996 |||||||| ||| |||||||||| | | | || ||| |||| ||||| | Sbjct 8205 TTGCTGGACGCCATTGGCCACGGCTTTGCCGCCGTGGAAATGGTGTGGAA---ACAGGCG 8261 Query 14997 CGCGAG---TGGATGCCGCTG-GCGTTCCACCACCGACCGCAGAGCTGGTTCCAG--CTC 15050 | ||| |||| ||| || ||| || | || ||||| ||||||||||| | | Sbjct 8262 GAAAACATCTGGCTGCC-CTGTGCCTTCTACAAGCGCCCGCAACGCTGGTTCCAGACCGC 8320 Query 15051 AACCCCGAAGACCAGAACGAGCTGCGGCTGCGCGACAACAGCCCGGCCGGCGAAGCCTTG 15110 ||||| | |||| |||| | || ||| ||| ||||| | ||| | | | Sbjct 8321 AACCC--ATGACCGTAACGCTATCCGCCTGATTGACGGCAGCCTTGACGGTGCTGAGCTT 8378 Query 15111 CAGCCCTTCGGCTGGATCATTCACCGGCCGCGTGCGCGCTCCGGCTATGTGGCCCGCAGC 15170 | ||||| |||||| | | || || | | || ||||| || ||| ||| Sbjct 8379 AATCCCTTTGGCTGGCTGCTGCATCGCCATCAGGCCAAAAGCGGCTGGGTAGCCGAAAGC 8438 Query 15171 GGCCTGTTCCGCGTGCTGGCCTGGCCGTACCTGTTCCGCCACTACGCCACCTCCGACCTG 15230 || |||||||| || |||| ||| | ||||||||| | || || |||||| Sbjct 8439 GGTCTGTTCCGGGTACTGGTGTGGACCTACCTGTTCAAGAATATTGCTGCCCGTGACCTG 8498 Query 15231 GCGGAAATGCTGGAAATCTATGGCCTGCCGATCCGGCTGGGGAAATAT-CCGCCAGGTAC 15289 |||||| | ||||||||||| |||||||||| ||| |||| | ||| ||| | || | Sbjct 8499 GCGGAATTTCTGGAAATCTACGGCCTGCCGACGCGGGTGGGCACCTATTCCGACGGGGCC 8558 Query 15290 TGCCGACGAGGAGAAGGCAACCT--TGCTGCGGGCCGTTACCGGCCTGGGCCATGCTGCC 15347 | || || || ||| ||| | ||||| |||| | || |||||| ||| ||| Sbjct 8559 AGT-GAAGAAGAAAAG--AACATGCTGCTGTGGGCGCTGCGCGACCTGGGGCATAACGCC 8615 Query 15348 GCAGGGATCATCCCCGAAACCATGGCCATCGACTTCCAGCAGGCCGCGCAGGGTAGCAG- 15406 | || || |||| |||| || || ||| ||| || ||||| ||||| |||| Sbjct 8616 GGCGGCATTATCCACGAACGCACCGCGATCCGCTTTGAGTCCGCCGCCCAGGG--GCAGG 8673 Query 15407 -CGAGCCGTTCCTGGCGATGATGCGGCAAAGCGAAGACGCCATATCCAAGGCGGTCCTGG 15465 ||| ||||||| | ||||||| | ||||| | || ||||||| | |||| Sbjct 8674 TCGACCCGTTCCAGTATATGATGCAGTGGTGCGAAAGCACCCAGTCCAAGGTCATTCTGG 8733 Query 15466 GCGGCACCCTGACCAGCACCACCAGCCAGTCAGGCG---GCGGCGCTTTTGCCTTGGGCC 15522 ||||||||||||||| | ||| | | | ||| || || | ||| | ||| Sbjct 8734 GCGGCACCCTGACCACC-----CAGGCGGAC-GGCAAGAGCAGCACCAACGCCCTAGGCA 8787 Query 15523 AGGTGCATAACGAGGTTCGGCACGACTTGCTGGCATCCGATGCCCGCCAGTTGGCGGCAA 15582 | ||||||||||| || || ||||| || || |||||| ||| |||| | | Sbjct 8788 ACGTGCATAACGAAGTGCGCCACGAGCTGACCGCCAGCGATGCGGTGCAGCTGGCCGGCA 8847 Query 15583 CGTTGTCCCGCGATCTGCT 15601 || || |||| || ||||| Sbjct 8848 CGCTGACCCGTGACCTGCT 8866 Score = 113 bits (124), Expect = 1e-20 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 16480 CCGCCTGGATACCATCTACCAGACCAACATGCAGTCGGCCTATATGGCAGGGCGCTA--C 16537 ||| ||||| ||||| | | ||||| | || || ||||||||||| |||||||| Sbjct 9714 CCGGCTGGAGACCATTTTTCGCACCAATACCCAATCTGCCTATATGGCCGGGCGCTATCA 9773 Query 16538 GCGGCCGCCTACGAAGCCAGGGAAACCCACCCTTACTGGATGTATGTGGCGGTGATGGAT 16597 ||||| || ||| | || | || |||||| |||||||||||||||||| Sbjct 9774 GCGGCTGC--GCGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 9831 Query 16598 GGCGTTACCCGGCCCAGCCATGCCGCCCTGCATGGGAAAGTGTTCAGGTGGGACGATCCG 16657 || ||||| |||||||||||||| |||||||| |||||| | | |||||| || Sbjct 9832 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 9891 Query 16658 ATCTGGCAGCACATCACCCCGCCCAATGGCTACAACTGCCGGTGCCGG 16705 |||| | | | ||||| || |||||||||||||| |||||| Sbjct 9892 GGCTGGGATACCCTGTTTCCGCCGAACGGCTACAACTGCCGCTGCCGG 9939 >seq3855 Length=27953 Score = 125 bits (138), Expect = 2e-24 Identities = 228/330 (69%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 20100 AACACCTATGGCTGGCTGGGGCAGTTCCCCAAGCTGCGCGAGTGGATCGGTCAGCGTGTC 20159 || ||||| ||||||||||||||||| ||| | | || |||||| |||| ||| Sbjct 12038 AATACCTACGGCTGGCTGGGGCAGTTTCCCGCGTTCCGGGAGTGGGTCGGCTCGCGCAGT 11979 Query 20160 ATCAAGGACATGGCGGCCCAGGGCTACCAGATCACCAACAAGCTCTTCGAATCGACCGTG 20219 ||| || | ||| || | | |||||| |||| ||||||| || ||| || || Sbjct 11978 ATCCAGCAGATGAAGGTCTATGGCTACGCCATCAACAACAAGACCTATGAAGGCACGGTC 11919 Query 20220 GGCGTAAAACGTACCGACATCGAGGACGACAACCTCGGCGTCTACGGACCGCTCATGCAG 20279 | | | | || || | ||||| ||||| ||||||| || | ||||| | ||| Sbjct 11918 GCCATTACCCGCGATGATTTTGAGGATGACAATCTCGGCGCGTATAGCCCGCTGTTTCAG 11859 Query 20280 GAAATGGGGCGTGCTGCCGGCGCGCATCCCGACGAACTGGTCTT---CGCCCTGCTCAAG 20336 |||||||| || || |||| ||| || || || || ||||| || |||| ||| | Sbjct 11858 GAAATGGGCCGCGCCGCCGCCGCACAACCGGATGAGCTGGTGTTTACCGCCTTGCGC--- 11802 Query 20337 GCCGGCAACGCCAATCTCTGCTACGACGGTCAAAAC-TTCTTCGACACCGATCACCCGGT 20395 | |||||| | |||||||||||| |||| | || || || | ||| || ||||| Sbjct 11801 GACGGCAATAAAACCGACTGCTACGACGG-CAAACCTTTTTTTGATAGCGAACATCCGGT 11743 Query 20396 CTATCCGAACGTGGATGGCACCGGCACGGC 20425 ||||| || || || |||| |||||| || Sbjct 11742 GTATCCCAAGGTCGACGGCAGCGGCACCGC 11713 >seq1892 Length=4253 Score = 111 bits (122), Expect = 4e-20 Identities = 175/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 12280 ATGGCGCACCCGAAGGAAACCCGCGACGCCCTGCGCCGCGCCTACGTCCTCGACCGCCAG 12339 |||||||||||| |||||| ||||||| | ||||| || ||||| | ||| | | Sbjct 391 ATGGCGCACCCGCAGGAAATCCGCGACACGCTGCGACGGGCCTATATTTTCGGGCAGATG 332 Query 12340 TCCCTGGAGGTCGCGGCCGCCATGTTCGGCGTCTCCTACGGCACCGCCCGCCGCTGGAAA 12399 ||||| ||| | || ||||| | ||||| | | ||| || || || ||||||||| Sbjct 331 TCCCTTGAGATTGCCGCCGCGCAATCGGGCGTTGCGTTCGGAACGGCACGGCGCTGGAAA 272 Query 12400 CAGCAGGCGGAAGCCGAGGGGGACGACTGGGACAAGGCACAATCGGCGCAGTTGCTGGCC 12459 | | || | | || ||| || |||||||||||| | | ||||| || |||| Sbjct 271 AAAGACGCTCAGGACGCGGGTGATGACTGGGACAAGCAGCGGGCTGCGCATATGATGGCG 212 Query 12460 GGTGGTGGGCTGGAGGACGTGGCGCGCCAGGTGCTGGCCGGCCTGGTGACCCAGTTCCAG 12519 || ||||| |||||||| | | ||| ||| | |||| ||||| || |||| |||| Sbjct 211 GGCGGTGGTCTGGAGGATATTGGCCGCGCGGTATTAACCGGGCTGGTAACGCAGTACCAG 152 Query 12520 GCCACCATGGA 12530 |||| |||| Sbjct 151 ACCACGCTGGA 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117085682662656