Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq3839 196 7e-45 seq2758 107 3e-18 >seq3839 Length=10135 Score = 196 bits (216), Expect = 7e-45 Identities = 197/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 99193 GCCGAAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTT 99252 ||||||| |||| | || || ||||| ||| | || |||||||| |||||||||||||| Sbjct 1835 GCCGAAGGGAGACAGAACCGGCACCGGAACCTTATCGATTTTCGGCCACCAGATGCGTTT 1776 Query 99253 CAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTAT 99312 |||||||||||| || ||||||||||| || || |||||||| || |||| || || || Sbjct 1775 CAATCTGCAAGACGGTTTTCCGCTGGTGACCACCAAGCGCTGCCATCTGCGCTCAATCAT 1716 Query 99313 TCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGG 99372 |||||| ||| |||||||||| || || || ||||| || ||| | | || ||| Sbjct 1715 TCACGAGCTGTTGTGGTTCCTCAACGGTGACACCAACGTTGGCTATCTGCACGACAATAA 1656 Query 99373 TGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAA 99432 || | |||||||| |||||| | | ||||||| || || |||||||||||||| Sbjct 1655 AGTTAGCATTTGGGATGAATGGGCCGATGAGAATGGCGATCTTGGGCCGGTATACGGTAA 1596 Query 99433 ACAGTGGCGGTCTTGG 99448 |||||||| ||||| Sbjct 1595 GCAGTGGCGCGCTTGG 1580 Score = 147 bits (162), Expect = 3e-30 Identities = 223/315 (71%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 99857 TCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCGTTTAATATTGCG 99916 || ||||||||||| || ||| ||||||||| | || ||||||| |||||||| Sbjct 1405 TCCTGTCAGCTTTACCAGCGCTCGTGTGATGTGTTCCTCGGTCTGCCGTTCAATATTGCC 1346 Query 99917 TCATACGCTTTGTTGATCCACATGTTTGCACAGCAG-GCTAACATGACCGTGGGTGATTT 99975 || || || || | || ||| | || |||||| || | | ||| || || || || Sbjct 1345 AGTTATGCACTGCTGGTGCATATGATGGCGCAGCAGTGCGACCTTGAA-GTCGGCGACTT 1287 Query 99976 CGTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTGGAACAAACCCGTACCCA 100035 |||||| | ||||||||| ||||||||||| |||||| |||| || || | | || Sbjct 1286 TGTCTGGACCGGTGGTGACACCCATCTGTACAACAACCATATGGAGCAGACGCATTTGCA 1227 Query 100036 GTTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTAAGCCAGACTCCAT 100095 | | |||| || || | || || |||| || ||||| || | ||| | Sbjct 1226 ACTGAGCCGTGAGCCAAAAGCGCTGCCGAAATTGATCATTAAACGCCGTCCTGCCTCGCT 1167 Query 100096 CTTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGACCCGCATCCTGCAATCAA 100155 || || ||| |||| || || |||||| | ||||||||||| ||||||||||| ||||| Sbjct 1166 GTTTGACTATCAGTTCGATGATTTCGAAATAGAAGGCTACGATCCGCATCCTGCCATCAA 1107 Query 100156 AGCACCGGTCGCGAT 100170 |||||||| ||||| Sbjct 1106 GGCACCGGTGGCGAT 1092 >seq2758 Length=5450 Score = 107 bits (118), Expect = 3e-18 Identities = 250/371 (67%), Gaps = 6/371 (2%) Strand=Plus/Minus Query 88264 AAAGACGTCGATCGTATCATTGTCACTCGCCCTGTCCTCTCCGCAGATGAAGACTTAGGC 88323 ||||| || || | || ||||| || || || || | || ||||| || | || Sbjct 2741 AAAGAGGTTGAAAGGATAATTGTTACCCGGCCGGTGTTACAGGCTGATGAGGATCTTGGT 2682 Query 88324 TTCCTGCCGGGCGATGTTGGTGAAAAGTTCGCGCCTTACTTCCGACCTGTTTACGATGTG 88383 || | || || ||| || ||| |||||||| || || ||||| || || || || || Sbjct 2681 TTTTTACCTGGTGATATTACTGAGAAGTTCGCTCCCTATTTCCGCCCGGTGTATGACGTA 2622 Query 88384 CTCTTAAAACGTCTGGGCAGC--CGTTTCTTACAATACTGCCTGAAACCGGGTATAGACA 88441 | ||||| ||| || |||| ||| |||||||| | |||| || | | Sbjct 2621 TTGCAGCGGCGTCTTGGC-GCATCGTT-CTTGCAATACTGTTTACGCCCGGAGATCGGAA 2564 Query 88442 AGGTTGAGATAGCTCCCTTCGCCTATATGCGTGGCCGCAACTTCGAGAACGCGGTCGTTA 88501 | || || ||||| || || ||||||||||| || |||| || || || || || || | Sbjct 2563 AAGTGGAAATAGCACCGTTTGCCTATATGCGCGGGCGCACATTTGAAAATGCTGTGGTGA 2504 Query 88502 TCTTAGATGAAGCTCAGAACACCACTGCTCAGCAGATGAAGCTCTTCCTGACCCGTATCG 88561 | | |||||||| ||||| ||| | | ||||||||| | |||||||||||| | | Sbjct 2503 TTCTTGATGAAGCACAGAATGTCACGGTGAATCAGATGAAGATGTTCCTGACCCGTCTGG 2444 Query 88562 GGGAGAACTGT-ATCGTTATCGTTAACGGTGACGTCACTCAGTGCGACTTACCTTCCGGG 88620 | || || ||| | || || || ||||| || | || || || || || || ||| Sbjct 2443 GTGA-AAATGTCACGGTGATTGTCAACGGGGATATTACGCAATGTGATTTGCCCGTCGGC 2385 Query 88621 GTGAAGTCGGG 88631 ||||| || || Sbjct 2384 GTGAAATCCGG 2374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716428463385600