Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031011.1 Length=168993 Score E Sequences producing significant alignments: (Bits) Value seq3532 183 3e-41 seq3176 145 8e-30 seq2351 134 1e-26 >seq3532 Length=11862 Score = 183 bits (202), Expect = 3e-41 Identities = 151/184 (82%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 126777 ATTACAAACTCTCGGTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAG 126836 |||||| || || || || ||||| | || || || || |||||||| || |||| | Sbjct 11149 ATTACAGGCTTTCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATG 11208 Query 126837 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 126896 |||| || || ||||||||||| || ||||||||||||| |||||| ||||||||||| | Sbjct 11209 AGTTGAAACGCACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGT 11268 Query 126897 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 126956 | || || ||||||||||| |||||||| ||||||||||| |||||||||||||| || | Sbjct 11269 GTTTTACCGCATCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCC 11328 Query 126957 CTTC 126960 |||| Sbjct 11329 CTTC 11332 >seq3176 Length=18404 Score = 145 bits (160), Expect = 8e-30 Identities = 134/170 (79%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 126791 GTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 126850 || || ||||| | ||||| || |||||||||| ||||| ||||| ||||| || Sbjct 6328 GTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCGAGTTGAAGCGCACG 6387 Query 126851 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 126910 |||||||| || ||||||||||||| |||||||||||||||||| || | | ||||| Sbjct 6388 GCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGTGTTCCATGGCATCC 6447 Query 126911 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 126960 ||| ||||||| || ||||| ||||||||||||||||||||||| Sbjct 6448 AACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCACCTTC 6497 >seq2351 Length=10305 Score = 134 bits (148), Expect = 1e-26 Identities = 292/437 (67%), Gaps = 0/437 (0%) Strand=Plus/Minus Query 38199 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 38258 |||| || || || ||||| | ||||| | |||||| |||| ||||| ||| || Sbjct 2986 TTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACGGTTGTTC 2927 Query 38259 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 38318 |||| || || || |||| ||||||| |||||| | || ||| | || || || Sbjct 2926 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAACGTTGCCGCT 2867 Query 38319 CCGCCACGAATTCCGCCCTGTGAACATGAGTTAACTGCAGCCTGAAAATGTTTCCAAAAA 38378 ||||| || | ||||||||||| || || || ||||| | ||| |||||||| | ||| Sbjct 2866 CCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATGTTTATAGAAA 2807 Query 38379 GGAATAACACCAGGATGGCATACATCACCCATGCCAATCTCAGAACCTTCGGCACGAATC 38438 |||||| |||| |||| || | ||||| || |||| ||| |||||||| Sbjct 2806 GGAATACAGCCAGTATGGAATGCTTCACCACCGCGAATCGGGCTACCCAGCGCACGAATA 2747 Query 38439 ATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCGGAA 38498 ||| ||||||| || || || || || | || | |||| || || | | ||| Sbjct 2746 CGACCGGCGTTAATGCCGATACCGGCACGCTGTGAAACGTATTTCACGATAGCACTGGAG 2687 Query 38499 GCCTTATTGATAGACTTCAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTGT 38558 | || || || | || || || |||||| | || || || || ||||| Sbjct 2686 GTGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGGAGCTGAACTGA 2627 Query 38559 CGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGAT 38618 || || || ||||| || | ||| || || |||||||||||||||| ||||| Sbjct 2626 CGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCAATGAAATCTTGAAGGTAGAA 2567 Query 38619 ACTGCTTCATAAAAACG 38635 | || ||||| || || Sbjct 2566 ATCGCGTCATAGAAGCG 2550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540622783779840