Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq3176 181 1e-40 seq3532 136 4e-27 seq2373 116 4e-21 seq2351 107 2e-18 seq3193 82.4 8e-11 >seq3176 Length=18404 Score = 181 bits (200), Expect = 1e-40 Identities = 153/188 (81%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 52704 AAACTACATAGCTTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAG 52763 ||| ||||| | | ||| || ||||| | ||| || || |||| |||||||||||||| Sbjct 6312 AAATTACATTGACTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAG 6371 Query 52764 GGAGTTAAAGCGAACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGG 52823 ||||| ||||| || |||||||||||||||||||| |||||||| || |||||| || Sbjct 6372 CGAGTTGAAGCGCACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGG 6431 Query 52824 GTCTTCCATCGCTTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACC 52883 || |||||| || || | || ||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 6432 GTGTTCCATGGCATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACC 6491 Query 52884 GCCTTCGA 52891 ||||||| Sbjct 6492 ACCTTCGA 6499 >seq3532 Length=11862 Score = 136 bits (150), Expect = 4e-27 Identities = 138/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 52716 TTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCG 52775 |||||| || ||||| | ||| || ||||| || |||||| ||||| ||||| || || Sbjct 11159 TTCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATGAGTTGAAACG 11218 Query 52776 AACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGC 52835 || |||||||||||||||||||| |||||||| ||||||||| |||| || | ||| Sbjct 11219 CACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGTGTTTTACCGC 11278 Query 52836 TTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCTTCGACACG 52895 || || | ||||||| || ||||| ||||||||||| || || ||||| || || Sbjct 11279 ATCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCCCTTCCACGCG 11338 >seq2373 Length=3101 Score = 116 bits (128), Expect = 4e-21 Identities = 75/82 (91%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 66400 AAATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTA 66459 |||||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1577 AAATGGTACGCCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGTTGCTCTA 1518 Query 66460 TCCAGCTGAGCTAAGAGTGCAT 66481 |||| |||||||||| | |||| Sbjct 1517 TCCAACTGAGCTAAGGGCGCAT 1496 >seq2351 Length=10305 Score = 107 bits (118), Expect = 2e-18 Identities = 273/408 (67%), Gaps = 8/408 (2%) Strand=Plus/Minus Query 139645 CTGGACACCATAATCTAAATGACGAATACGGTTTTCATCGATACCTTTATTATTCTTCAG 139704 ||| || || ||||| | ||||| | ||||| | || | || || |||||||| Sbjct 2981 CTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACGGTTGTTCTTCAG 2922 Query 139705 TACGATTAATTTTTCATATTCCAGATGCCACATCGGATAATATAATGTCGCCGCACCACC 139764 || | | |||| |||||||||||||| ||| ||| | || || ||||| || || Sbjct 2921 CACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAACGTTGCCGCTCCGCC 2862 Query 139765 ACGTACACCACCTTGTGAACATGATTTCACTGATGCCTGATGAGTTTTCCAGAATGGAAT 139824 || ||||| || ||||| || |||||||||| | ||| | ||| |||| ||||| Sbjct 2861 GCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATGTTTATAGAAAGGAAT 2802 Query 139825 AACACCAGTGTGACGAA--CTTCGCCCGCGCCAATTTTAGAACCTTCTGCACG-ATACAT 139881 | ||||| || ||| |||| || ||| ||| ||| ||||| |||| Sbjct 2801 ACAGCCAGTATG--GAATGCTTCACCACCGCGAATCGGGCTACCCAGCGCACGAATAC-G 2745 Query 139882 ACCAGCATTAACACCAATACCAGCACGTTTACTGATGTACTTAATAATA-CATTCGTTTG 139940 ||| || |||| || ||||| ||||| | | ||| || | ||| || | | | Sbjct 2744 ACCGGCGTTAATGCCGATACCGGCACGCTGTGAAACGTATTTCACGATAGCACT-GGAGG 2686 Query 139941 TCTTGTTAATTGAATCCAGCGAATCACCGCCTTCAATAACAACACAAGAGCTAAACTGAC 140000 | |||||| |||||||| || |||| ||||| | || || ||||| ||||||| Sbjct 2685 TGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGGAGCTGAACTGAC 2626 Query 140001 GTGTCGGAGTTCTTACGCCCGCCATAATCGGAGTAGGTAAACTAATCT 140048 | || || || | ||||| | ||| ||||| || || || ||||| Sbjct 2625 GGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCAATGAAATCT 2578 Score = 91.5 bits (100), Expect = 2e-13 Identities = 175/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 137227 GCACGTTTCATAATCGATTCATTAAGAACGATTGTATCGAATTCTGCCGCTGGGTCTTCG 137286 |||||||||| |||| |||||| |||||| |||||| | || || || | | Sbjct 4791 GCACGTTTCAGAATCTCTTCATTGGTAACGATATCATCGAACACCAGTGCCGGATCGTTG 4732 Query 137287 TAAACGTTCCGCATAATATGAGTATAAGAACGAGAATGAATTGTTTCGCTGAATGTCCAT 137346 || || || || ||||| ||||| ||||| ||||| || ||||| |||| ||| Sbjct 4731 ACAATATTGCGGATGATATGGGTATAGGAACGGGAATGGATGGTTTCTGAAAATGCCCAG 4672 Query 137347 GTTTGAACCCATGTTTCAAAGCC-GACATCAGAGATCAACGGCGCAAATGCCAGAGCTGG 137405 |||| | ||| ||||| || | | || ||||||| ||| ||||| | | | | Sbjct 4671 GTTTCTATCCAGGTTTCCAACTCTGGGATG-GAGATCAGCGGTAACAATGCGAC-GTTCG 4614 Query 137406 AGCT-CGTCCTTGAATAGAATCAAGCAGTGTCTGATATTTTAAGTTATCGGTAAAAATAC 137464 ||| ||||||||||| || || |||||||| || ||||| | || | | || || Sbjct 4613 GGCTGCGTCCTTGAATGGAGTCCAGCAGTGTTTGGTATTTCAGATTGCTGATGAAGATGT 4554 Query 137465 CCTTTTCATGTTC 137477 |||||||||||| Sbjct 4553 GCTTTTCATGTTC 4541 >seq3193 Length=7383 Score = 82.4 bits (90), Expect = 8e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 66400 AAATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGT 66452 |||||| || ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1135 AAATGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGACGT 1187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522089303086080