Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq2758 141 1e-28 seq3839 134 2e-26 >seq2758 Length=5450 Score = 141 bits (156), Expect = 1e-28 Identities = 316/467 (68%), Gaps = 13/467 (3%) Strand=Plus/Minus Query 88119 CCAGCAGCAATACATGAATGCGCTGGAAACCAAACAACTGATATTCGCCACCGGTGAAGC 88178 |||| |||| ||| || ||| | |||| ||||| | || || |||||||| || || Sbjct 2847 CCAGGAGCATTACTTGTCTGCAATAGAAAATAAACAGTTAATCTTTGCCACCGGCGAGGC 2788 Query 88179 AGGGTGCGGTAAAACATTCCTTTGCGCCGCCTACGCTGCCGAACGTCTACTGGCAAAAGA 88238 ||||| || ||||| || || | || || | || || || | | ||||| Sbjct 2787 GGGGTGTGGCAAAACGTTTCTCAGTGCGGCTGAAGC-GCTGAT----TCAT----AAAGA 2737 Query 88239 CTTTGACCGTATCATTGTCACCCGTCCAGTCCTCTCTGCAGATGAAGACCTTGGCTTCTT 88298 |||| | || ||||| ||||| || || | || ||||| || ||||| || || Sbjct 2736 GGTTGAAAGGATAATTGTTACCCGGCCGGTGTTACAGGCTGATGAGGATCTTGGTTTTTT 2677 Query 88299 GCCCGGCGACGTCTCAGAGAAGTTCGCCCCTTACTTCCGTCCTGTCTACGACGTGCTA-A 88357 || || || | | ||||||||||| || || ||||| || || || ||||| | | Sbjct 2676 ACCTGGTGATATTACTGAGAAGTTCGCTCCCTATTTCCGCCCGGTGTATGACGTATTGCA 2617 Query 88358 GCAAACGCTTAGGTGGTCAATTCTTACGCTACTGTTTAAAGCCGGGAATTGACAAGGTAG 88417 || ||| | || ||||| | ||||||||| |||| || | || || | Sbjct 2616 GCGGCGTCTTGGCGCATCG-TTCTTGCAATACTGTTTACGCCCGGAGATCGGAAAAGTGG 2558 Query 88418 AGATTGCTCCCTTCGCCTACATGCGCGGACGTAGCTTTGAAAATGCAGTCATTTTATTAG 88477 | || || || || ||||| |||||||| || | ||||||||||| || | | | | Sbjct 2557 AAATAGCACCGTTTGCCTATATGCGCGGGCGCACATTTGAAAATGCTGTGGTGATTCTTG 2498 Query 88478 ATGAAGCTCAGAACACTACTGCTCAGCAGATGAAGCTCTTCCTGACACGTATCGGGGAGA 88537 ||||||| ||||| || | | ||||||||| | |||||||| ||| | || || | Sbjct 2497 ATGAAGCACAGAATGTCACGGTGAATCAGATGAAGATGTTCCTGACCCGTCTGGGTGAAA 2438 Query 88538 ACTGTCTCG-TGATTGTCAATGGCGATATTACTCAGTGCGACTTACC 88583 | |||| || |||||||||| || |||||||| || || || || || Sbjct 2437 A-TGTCACGGTGATTGTCAACGGGGATATTACGCAATGTGATTTGCC 2392 >seq3839 Length=10135 Score = 134 bits (148), Expect = 2e-26 Identities = 225/322 (70%), Gaps = 10/322 (3%) Strand=Plus/Minus Query 100167 CTGTCCTGTCAACTCTACCAACGTAGCGCG-GACGTGTTCTTAGGTGTGCCGTTCAATAT 100225 || |||||||| || ||||| || || | || |||||| | ||| ||||||||||||| Sbjct 1408 CTTTCCTGTCAGCTTTACCAGCGCT-CGTGTGATGTGTTCCTCGGTCTGCCGTTCAATAT 1350 Query 100226 CGCGTCGTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGA 100285 || || || |||||||| || ||| | || || || | || | | || ||||| Sbjct 1349 TGCCAGTTATGCACTGCTGGTGCATATGATGGCGCAGCAGTGCGACCTTGAAGTCGGCGA 1290 Query 100286 CTTCGTCTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACAGACACGTAC 100345 ||| |||||||| ||||||||| |||||||| ||||||| |||| ||||| | | Sbjct 1289 CTTTGTCTGGACCGGTGGTGACACCCATCTGTACAACAACCATATGGAGCAGACGCATTT 1230 Query 100346 TCAGCTAGGACGCACTCC----GCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTG 100401 || || | || || |||| | || |||||| | || || || |||| Sbjct 1229 GCAACTGAGCCGTGAGCCAAAAGCGC----TGCCGAAATTGATCATTAAACGCCGTCCTG 1174 Query 100402 ACTCTATCTTCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCCTTACCCCG 100461 ||| | || |||||| |||| || || ||||| || || | |||||| || | || | Sbjct 1173 CCTCGCTGTTTGACTATCAGTTCGATGATTTCGAAATAGAAGGCTACGATCCGCATCCTG 1114 Query 100462 CCATTAAAGCGCCGGTGGCGAT 100483 |||| || || ||||||||||| Sbjct 1113 CCATCAAGGCACCGGTGGCGAT 1092 Score = 131 bits (144), Expect = 2e-25 Identities = 213/305 (70%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 99468 ATGAAACAATATTTGGAATTAATGAGTAAGGTTTTAAATGAAGG--CGTTGTTAAAGGCG 99525 |||||||| ||| ||||||| ||| ||||| | |||| || || | || || | Sbjct 1882 ATGAAACAGTATCTGGAATTGATGCAGAAGGTGCTTGATGAGGGAACGCCG--AAGGGAG 1825 Query 99526 ACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTG 99585 || | || ||||| || || || || | || || || || |||||||| ||| || | Sbjct 1824 ACAGAACCGGCACCGGAACCTTATCGATTTTCGGCCACCAGATGCGTTTCAATCTGCAAG 1765 Query 99586 AAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCC 99645 | |||||||| ||||| || || |||||||| || || || || || ||||| || || Sbjct 1764 ACGGTTTTCCGCTGGTGACCACCAAGCGCTGCCATCTGCGCTCAATCATTCACGAGCTGT 1705 Query 99646 TTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCT 99705 | |||||||| || || || ||||| || ||| | || || || | || | Sbjct 1704 TGTGGTTCCTCAACGGTGACACCAACGTTGGCTATCTGCACGACAATAAAGTTAGCATTT 1645 Query 99706 GGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCGGT 99765 || |||| |||| | ||||| || || | || ||||||||||| ||||||||||| Sbjct 1644 GGGATGAATGGGCCGATGAGAATGGCGATCTTGGGCCGGTATACGGTAAGCAGTGGCGCG 1585 Query 99766 CTTGG 99770 ||||| Sbjct 1584 CTTGG 1580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734238779950080