Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031047.1 Length=170770 Score E Sequences producing significant alignments: (Bits) Value seq2351 161 1e-34 seq3532 152 6e-32 seq3176 116 4e-21 >seq2351 Length=10305 Score = 161 bits (178), Expect = 1e-34 Identities = 298/437 (68%), Gaps = 0/437 (0%) Strand=Plus/Plus Query 151964 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 152023 || || ||||| || | ||||| |||||||||||||||| || || ||| | || Sbjct 2550 CGCTTCTATGACGCGATTTCTACCTTCAAGATTTCATTGCCAACGCCGATCATGTCCGGC 2609 Query 152024 TGTCGTACTCCTACTCGACAGTTCAGTTCATGCGTTGTTATTGAGGCAGGAGATTCGCTG 152083 ||||| || || || |||||||| || ||||| | |||||| || || ||| Sbjct 2610 GTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTGTTGATTGAGTGCGGCGACAGCCTG 2669 Query 152084 AAGTCTATCAATAAGGCTTCTGCTTCAATTGTTGAATATATCTCCAAACGAGCTGGAATC 152143 | || || || | || | | || || |||| | || | || || || ||| Sbjct 2670 GATTCCATTAACGCCACCTCCAGTGCTATCGTGAAATACGTTTCACAGCGTGCCGGTATC 2729 Query 152144 GGCATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAAGTACGC 152203 |||||||||| ||| |||||||| ||| |||| || ||||||| | | Sbjct 2730 GGCATTAACGCCGGTCGTATTCGTGCGCTGGGTAGCCCGATTCGCGGTGGTGAAGCATTC 2789 Query 152204 CATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGCTCACAG 152263 |||||||| ||||||||| | |||||||| ||||| || || ||||| ||||||||| Sbjct 2790 CATACTGGCTGTATTCCTTTCTATAAACATTTCCAGACCGCAGTGAAATCCTGCTCACAG 2849 Query 152264 GGTGGAATTCGTGGCGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTTGAA 152323 || || | || ||||| || || || | ||| || | |||||| ||||||| ||| Sbjct 2850 GGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTTTACCCGCTGTGGCATCTGGAAGTGGAA 2909 Query 152324 AATCTTCTCGTTTTGAAAAATAACAAAGGCGTAGAAGAAAACCGCATCCGTCATATGGAT 152383 | || || || |||| || ||| ||||| |||| |||||| | ||||| | ||| Sbjct 2910 AGCCTGCTGGTGCTGAAGAACAACCGTGGCGTGGAAGGCAACCGCGTGCGTCACCTCGAT 2969 Query 152384 TATAGTGTTCAGCTGAA 152400 || | || ||| |||| Sbjct 2970 TACGGCGTGCAGTTGAA 2986 >seq3532 Length=11862 Score = 152 bits (168), Expect = 6e-32 Identities = 126/154 (82%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 62569 CTGCGTCGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCCGCAGCTGACC 62628 ||||| |||||||| ||||||||||| || || || ||||||||||| |||||| ||||| Sbjct 11302 CTGCGCCGTGAAACGCTGGAAGATGCGGTAAAACACCCGGAAAAATACCCGCAGTTGACC 11243 Query 62629 ATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACAGCAGCGCGAC 62688 |||||||| || ||||||||||| || || ||||| |||| || |||||||| || ||| Sbjct 11242 ATCCGTGTTTCTGGTTATGCAGTGCGTTTCAACTCATTGACCCCAGAACAGCAACGTGAC 11183 Query 62689 GTTATCGCTCGTACCTTCACCGAGAGTTTGTAAT 62722 || || | ||||| ||||| || || |||||| Sbjct 11182 GTGATTACGCGTACTTTCACTGAAAGCCTGTAAT 11149 >seq3176 Length=18404 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 62575 CGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGT 62634 ||||||| ||| ||||| | | || |||||||||||||||||| ||||||||||| Sbjct 6461 CGTGAAATGCTGTTGGATGCCATGGAACACCCGGAAAAATATCCGCAGTTGACCATCCGT 6402 Query 62635 GTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATC 62694 || || |||||||| || ||||| ||||| ||||| |||||||||| |||||||| Sbjct 6401 GTTTCTGGTTATGCCGTGCGCTTCAACTCGCTGACCAAAGAACAGCAGCAAGACGTTATT 6342 Query 62695 GCTCGTACCTTCAC 62708 | ||||| ||||| Sbjct 6341 ACCCGTACTTTCAC 6328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546308901734400