Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq3839 127 1e-24 >seq3839 Length=10135 Score = 127 bits (140), Expect = 1e-24 Identities = 416/631 (66%), Gaps = 24/631 (4%) Strand=Plus/Minus Query 828 CGAAGGATGATCGCACCGGCACCGGCACGCTGAGCAAGTT-CGGCGCCCAGCTGCGGTAC 886 |||||| || | ||||||||||| || || | | | || |||| |||| |||| | | Sbjct 1833 CGAAGGGAGACAGAACCGGCACCGGAAC-CTTATCGATTTTCGGCCACCAGATGCGTTTC 1775 Query 887 GACCTCACCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCA-CTTCA---AATCGGT 942 | || || || || |||||||| ||||| |||||| ||| || | |||| | Sbjct 1774 AATCTGCAAGACGGTTTTCCGCTGGTGACCACCAAGCGCTGCCATCTGCGCTCAATCATT 1715 Query 943 TGCGTACGAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCA--ACGAC 1000 |||| || |||||||||||| || ||||| ||||| ||| || ||||| Sbjct 1714 C----ACGAGCTGTTGTGGTTCCTCAACGGTGACACCAACGTT--GGCTATCTGCACGAC 1661 Query 1001 AACGGCGTCACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTAC 1060 || || | ||| ||||| || |||||||| | || | || || || || ||| Sbjct 1660 AATAAAGTTAGCATTTGGGATGAATGGGCCGATGAGAATGGCGATCTTGGGCCGGTATAC 1601 Query 1061 GGCGCGCAGTGGCGGCACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATC 1120 || ||||||||| ||| | || || |||| | ||| | ||||||||| | Sbjct 1600 GGTAAGCAGTGGCGCGCTTGG---GGCGCGG-CGGATGGTCGCCA--GATTGACCAACTG 1547 Query 1121 TCGGCCGCCGTGGAGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCA 1180 ||| || | | | | |||| || | || ||||| | | | || || || Sbjct 1546 CAAACCGTGCTGCAACAGTTAAAGCAGGATCCAAATTCACGCCGTATCATTGTTTCTGCC 1487 Query 1181 TGGAACGTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTG 1240 |||||||| ||||| | | ||||| || |||||||| | ||||| | Sbjct 1486 TGGAACGTGGGTGAGTTAGATCAAATGGCGCTGGCACCGTGCCATGCGTTTTTCCAATTC 1427 Query 1241 TACGTCGTCGACGGCCGGCTCTCGCTG-CAGGTCTACCAGCGCAGCGCG-GACATGTTCC 1298 ||||| | || ||| || || ||| ||| | ||||||||| || | || |||||| Sbjct 1426 TACGTGGCGGATGGCAAACTTTC-CTGTCAGCTTTACCAGCGCT-CGTGTGATGTGTTCC 1369 Query 1299 TCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGG 1358 ||||| ||||||||||||| ||| || || || || | ||| ||| | ||||||||| Sbjct 1368 TCGGTCTGCCGTTCAATATTGCCAGTTATGCACTGCTGGTGCATATGATGGCGCAGCAGT 1309 Query 1359 CCGGCCTGCGGGTGGGTGAGCTGATCTGGACCGGCGGCGACTGCCACATCTACAACAACC 1418 || ||| || || || | |||||||||| || ||| ||| | |||||||||| Sbjct 1308 GCGACCTTGAAGTCGGCGACTTTGTCTGGACCGGTGGTGACACCCATCTGTACAACAACC 1249 Query 1419 ACGTCGACCAGGCGCTGATGCAGCTCCGCCG 1449 | | || ||| ||| |||| || |||| Sbjct 1248 ATATGGAGCAGACGCATTTGCAACTGAGCCG 1218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296116879095168