Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq2625 428 1e-115 seq3361 271 2e-68 seq3702 120 8e-23 seq2782 114 3e-21 seq3956 100 8e-17 >seq2625 Length=4495 Score = 428 bits (474), Expect = 1e-115 Identities = 1017/1521 (67%), Gaps = 22/1521 (1%) Strand=Plus/Minus Query 17487 TGGACGAAGCGAGCAGAGAGAATGAGCAGGCAATACAGGATTCCAGCCTTTTTGACGTAG 17546 |||||| || | | | || | ||| | |||| || ||| ||||||||||||| || | Sbjct 1510 TGGACGCTGCAAACCGGGATATAGAGAACGCAAAGCATGATGCCAGCCTTTTTGAGGTGG 1451 Query 17547 CTGTAGCGTGTTTCTTGAGAGGATAATTGAATGAGACAGGAATGTATTCAGGCCGTGCAA 17606 | || || ||| | || ||||| |||||| | |||||||| || ||||| || Sbjct 1450 CGGTGAGTTGCTTCCTCAGGAGATAAAACGATGAGAGACGAATGTATCCAAGCCGTAAAA 1391 Query 17607 CAGGCCGCACAGCGCACTCTTA-CAGCCCGAGAAATACAGAATATCGAAGACCGCATTTA 17665 ||| | |||||| || ||| |||| |||||||| ||| ||||| |||||| Sbjct 1390 GCGGCATCGCAGCGC-CTATTAACAGCGGCTGAAATACAAGGTATTGAAGATCGCATTGT 1332 Query 17666 CCGCAATATGCGATCTATCGCCCGTGACGATCCGATGTCATGGCGTCAACTTAACGACGC 17725 || ||||| | | || || | || || | |||||||| | | || | Sbjct 1331 GAAAAACATGCGTAATTTGGCACGAAATGACCCTACTTCATGGCGGGCTATGAGTGAATC 1272 Query 17726 TGAACGCCTGCGCCGCGCCGGGCAACTGGCGGCTGAAGAGTTGCAGCGAGAAGCGGCACT 17785 || || |||||||||| || || || || || || || ||| |||||| ||| | | Sbjct 1271 AGAGCGGATGCGCCGCGCTGGTCAGCTTGCCGCCGATGAATTGGGGCGAGAGGCGCTATT 1212 Query 17786 GAAAAAACGCCGTGTCGCGCTTACCATCGCAGCGCGTCAGCGCCTTGACAACTTCATTAA 17845 |||||||| ||||| ||| | ||||| || ||||| || || | ||| | || || Sbjct 1211 AAAAAAACGTCGTGTAGCGTTAACCATTGCTGCGCGGCAACGGTTGGACGCTTATATCAA 1152 Query 17846 CAGTTATCAGGGTGCTGACGGAAAGCTAGGCGCACTCAACCGCACGATCGCCTTCAGCGC 17905 || | || | || || | || || ||||| ||||| || || || Sbjct 1151 AGACTACAAAGGGAAAAATGGCGCACTGGAAGCGCTAAACCGTACGATAGCATTTCATGC 1092 Query 17906 CGACGGTAAATCAAACTTTCTGTCTGTTGAGTCTCGAACGAAAGCGACGCGTGATTACGC 17965 ||||| || | | ||||| || || ||||| || | || || || |||||||| || Sbjct 1091 AGACGGCAAGGCCCATTTTCTTTCCGTAGAGTCACGCGCAAAGGCAACCCGTGATTATGC 1032 Query 17966 ATTAAGCCAGTTGCAGGAAGCATTTGAAGCCGTTGACCCTCGTTTCTTTGGCCTGT---T 18022 | || ||||| ||||| |||||||||||| || || ||||| || || || | Sbjct 1031 GCTTAGTCAGTTAGAGGAATTATTTGAAGCCGTCGATCCGCGTTTTTT---CCAGTGGCT 975 Query 18023 TGAAGATGAAGCCGGC-GTGCGCGATCTGGTGTTTGAGATGCGCGGGCAGAATACTGGCA 18081 ||||| |||| || || || ||||| | | ||| ||||| |||||| | || | | Sbjct 974 AGAAGAC-AAGCAGGGAGTTCGGGATCTTATTTATGAAATGCGTGGGCAGGACACCAGAA 916 Query 18082 ATGCGAAGGCCAGAAAAGGGGCGAAAGCCTGGGGGGAGGTTACTGAACTGCTGCGCCGCC 18141 |||| | || | |||||||||| |||| ||| | ||| ||||| | || ||| | Sbjct 915 ATGCCAGAGCTAAAAAAGGGGCGCAAGCATGGAAGCGGGTATCTGAATTACTTCGCACAC 856 Query 18142 GCTTCAATGATGCCGGTGGCGATATCGGCTACCTGGAAAACTGGGGTATACCTCAGCACC 18201 | || || ||||||||||| ||||| || || |||| | ||||| | |||||||| | Sbjct 855 GGTTTAACGATGCCGGTGGGGATATTGGTCACTTGGAGGATTGGGGGCTTCCTCAGCATC 796 Query 18202 ACTCGATGGAAAAGGTTGGTGCTGTATCGAAAGATAAATGGGTAAGCGATGTGATCGGCA 18261 |||| ||||| || |||| | |||||||||| | ||||| | ||| ||||| | Sbjct 795 ACTCAATGGATAAAGTTGCCAAAGCATCGAAAGATGAGTGGGTTGGGTTTGTTATCGGAA 736 Query 18262 AACTCGATCGCAAATATTACATCCGCGCCGACGGCCAGTTGATGAATGATACTGAGTT-- 18319 ||||||| || || | ||||| | ||||| | |||| ||| ||||| | Sbjct 735 AACTCGACCGTAATAAATACATTAAAGAAAACGGCGAACCAATGACAGATGCTGAGATTA 676 Query 18320 GTCATCTTTTCTCGGTGAAGCCTATAACACGATTGCCACAGGCGGCCTTAATAAACTCAC 18379 || || || || ||| | || ||| | || || ||||| ||||| | ||||||||| Sbjct 675 GTAAT--TTCCTTGGTAATGCTTATGAAACCATAGCCACGGGCGGGATAAATAAACTCGG 618 Query 18380 TGATACCGGTATGCGTATTTCCGGTGCGCGGGCAAACCGTGGCAACGCGTCACGCCAGAT 18439 ||||| ||| || | | || |||||||| |||| | || | ||| ||||||||| Sbjct 617 TGATAAAGGTCTGAGGGTATCAGGTGCGCGATCAAATAGGGGTAGCGCTGAACGCCAGAT 558 Query 18440 CCACTTTAAAGACGCTGATTCATACCTTCAGTACCAGCAGATGTATGGCGACAGGTCACT 18499 ||| ||||| || ||||| ||||| | | || |||||| | || || | || || Sbjct 557 CCATTTTAACGATGCTGAATCATATTTGGATTATCAGCAGCGTTTCGGGGAAAAATCGCT 498 Query 18500 CTGGGAAATCATGGTAGGGCACCTGGAAGGTATCAGCAAAGACATTGCGCTGGTGGAGAC 18559 ||||| || | || ||| | || || || |||||||| ||||| ||||| || || Sbjct 497 TTGGGATATTCTCGTCAACCACATCGAGGGGATTAGCAAAGATATTGCCCTGGTTGAAAC 438 Query 18560 ATACGGGCCAAACCCGGATCACGTGTTCCGATCTCTGCTTGACCAGACGAAATCAG--AG 18617 ||||| || ||||| || ||||| ||||| | ||||| || || | ||| | Sbjct 437 CTACGGCCCTAACCCCGACCACGTTTTCCGTGCGCTGCTGGA--TGAATTGACCAGTAAA 380 Query 18618 ACAGCCACGGCTAACCCGCAGAACACAGGCAAAATAGAACGGC-AGGCGAACAGCACAGA 18676 || || |||| || || | | | || | || || | | | |||| | || || Sbjct 379 ACCGCAACGGAAAATCCTCGCCGCGCTGGAAGCATTGAGAGTCTTAGTGAAC-GTACTGA 321 Query 18677 GAACCTGTACAACTTCATTTCTGGAAAGACGCAACCTGTAGCGAATCCGCA-CATCGCTC 18735 ||||| || ||||| | | ||||| || | || |||| || ||| | || |||| Sbjct 320 AAACCTCTATAACTTTGTCGCAGGAAAAACCCGGCCAATAGCTAA-CCGAAGTATTGCTC 262 Query 18736 GCTGGTCTGACAATATCCGCAACTGGATGGTTGCCAGCCGTCTCGGTTCCGCGCTTCTGT 18795 |||||||||| | | ||||||||| | ||||| || || ||||| ||||| | Sbjct 261 GCTGGTCTGATGACCTGCGCAACTGGTTAATTGCCTCTCGCCTGGGTTCTGCGCTGGTCA 202 Query 18796 CATCATTCTCTGATCTCGGAACCATGTACCTGTCTGCGAAGGTTACCAACCTGCCAATGA 18855 | || | || ||| ||| || |||||||| | || || | |||||| || ||| Sbjct 201 CGTCGCTATCAGATAACGGCACGATGTACCTCACCGCTCGAGTAAACAACCTTCCTATGG 142 Query 18856 ACCAGTTATTTCGCAACCAGTTAGAGGCAATGAACCCCGCTAACCGCACGGAACTGGCGC 18915 || | || || |||||| ||| || | ||||| | || |||||| || Sbjct 141 CGCAACTCTTACGTAACCAGCTAGCAGCGTTCAACCCTACAAATAAAGACGAACTGAGGC 82 Query 18916 GGGCACGCCGGGCTGGTCTGGCAATGGAATCACTACTTGGCAGCGTTAACCGCTGGGCGA 18975 ||| || || || || |||| ||||| | || |||| |||| |||||| ||||| | Sbjct 81 TGGCGCGTCGTGCAGGATTGGCGATGGATACGCTTATTGGTAGCGCTAACCGTTGGGCTA 22 Query 18976 TGGATAATATGGGGCCATCTG 18996 ||| |||||||||||||||| Sbjct 21 CGGACAATATGGGGCCATCTG 1 Score = 87.8 bits (96), Expect = 5e-13 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 15996 TCAATGACACTTCAGTTTCATACATTGCCGAGCAGCGAAAACTCGCAGAGCAGCAGGTAA 16055 |||||||||| |||| | || || |||||||||||||| |||||| |||| |||| Sbjct 2995 TCAATGACACGTCAGAATTATTTATCAAAGAGCAGCGAAAACTGGCAGAGGAGCAAGTAA 2936 Query 16056 AGCGGCTGACGCCTGATTCCGCGACAACCGGCACAGCCGGGCAGGTTCTTTATGGGCTGT 16115 || ||||||| || | | ||||| || || |||||||| |||||| || || | Sbjct 2935 GACGTTTGACGCCAGACCCTGGAACAACGGGTACCGCCGGGCAAATTCTTTTTGCTCTCT 2876 Query 16116 TCGATATGGGTGGGCAGGCTGTTGTTGGTACAACGCTCGGTGGTCCTGTCGGCGGCGCGG 16175 | ||||| |||||||| || | || | | ||||| | | |||| || | Sbjct 2875 CACAAATGGGAGGGCAGGCGGTGGCAGGCTCTTTAGTGGGTGGGCTTCCGGGCGCAGCCG 2816 Query 16176 CGGCCGTTACTTCTCTACAGGGGTTTTCTGAATTTGAA 16213 | ||||| | || | || ||||| ||||| | |||| Sbjct 2815 CTACCGTTGGTGCTTTGCAAGGGTTCTCTGATTATGAA 2778 >seq3361 Length=1041 Score = 271 bits (300), Expect = 2e-68 Identities = 444/640 (69%), Gaps = 0/640 (0%) Strand=Plus/Plus Query 19411 CAGGCATCCAGCGCGGGACATGGAAGGGAGAACTAACCCGTAGCGTATTCCTGTTTAAGT 19470 ||||| | |||||||| || |||||||| || || ||||| || || || ||||| | Sbjct 2 CAGGCTTACAGCGCGGAACGTGGAAGGGTGAGCTGGTTCGTAGTGTGTTTCTTTTTAAAT 61 Query 19471 CTTTCCCGATCTCAGTTGTCATGCGTCACTGGTCGCGTGCAATGGGAATGCCGTCTGCCG 19530 | |||||||| | || || ||||| || ||| || | || | | || ||||| | Sbjct 62 CATTCCCGATAGCTGTAGTGATGCGCCATTGGGCGAGAGCGTTTAACACTCCTTCTGCTG 121 Query 19531 GTGGGCGTGCGGCATACATCGCGACGTTTATCGCCAGTACAACCATTCTTGGCGCGCTGT 19590 | || || ||||| || | || ||||| | || || || || | ||||| || ||| Sbjct 122 GCGGTCGAGCGGCCTATCTTGCAGCGTTTTTGGCAAGCACTACGGTGCTTGGTGCCATGT 181 Query 19591 CGCAGCAGTTAAACGATATGGCATCAGGCAGGAACCCGCGTGATATGACCGGTGATGATG 19650 | ||||| ||||||||||| ||||| | ||| || || || ||| | | Sbjct 182 CCCAGCAAATAAACGATATGCTTTCAGGGAAAGACCTCCGCGAAGCTTTTGGCGATAAAG 241 Query 19651 CCGCAAAATTCTGGCTTGGTGCATTACTGAAAGGTGGTGGTCTTGGCCTGTATGGCGATT 19710 || | | |||||| || ||| ||||| |||||||||||| | || || |||||||| | Sbjct 242 CCCCTCAGTTCTGGATTAATGCGTTACTTAAAGGTGGTGGTATGGGGCTTTATGGCGACT 301 Query 19711 TCCTTCTGTCTGATCACACTAGGTACGGAAGTGGTGCGCTGGCGTCGATGCTTGGCCCGG 19770 || | | || ||||| || | ||||| | ||| ||||||| ||||||||||| | Sbjct 302 TCTTCTTTTCAGATCATACCCGCTACGGCTCCGACGCGATGGCGTCAATGCTTGGCCCCG 361 Query 19771 TGGCTGGTCTTGTTGATGATGTCGTTAAGATTGCCCAGGGTATCCCGCTTAATGCTGTAG 19830 | ||||| | | | ||||| ||||| |||||||||| ||||| || ||||| || | Sbjct 362 TTGCTGGGTTAATCGGTGATGCGGTTAAACTTGCCCAGGGCATCCCCCTGAATGCCGTTG 421 Query 19831 AAGGAAAATACGAACAAACTGGCGGTGATCTGGTGAAACTTGGCAAAGGACTGACGCCTG 19890 | |||||| || ||||| ||||| ||| | || ||| | | |||||| |||| || | Sbjct 422 AGGGAAAACCAGAGCAAACAGGCGGCGATGTCGTTAAATTCGTCAAAGGGCTGATACCCG 481 Query 19891 GCGCGAATATCTGGTATCTCAAAGCCGCCATAGATCACATGATCTTCAACCAGATGCAGG 19950 | || | |||||| ||||| || | ||||| ||| | || || ||| |||||| Sbjct 482 GGCAAAACCTTTGGTATACAAAAGCAGCATTGGATCATATGTTTTTTAATCAGTTGCAGG 541 Query 19951 AGTATTTTTCTCCTGGCTATCTGCGTAAGATGGAACAACGTTCGAAGAAAGAATTTAACC 20010 | || ||||| || || |||||| ||||| | | || || |||||||| | Sbjct 542 AATACTTTTCGCCGGGTTATCTGAACCGAATGGAGCGCAGATCCCAGCGTGAATTTAATC 601 Query 20011 AGACATACTGGTGGCGGCCGCAGGACACGCTACCGCAATA 20050 | || || |||||||| ||||| ||| | | || ||||| Sbjct 602 AAACCTATTGGTGGCGTCCGCAAGACGCTATGCCACAATA 641 >seq3702 Length=11964 Score = 120 bits (132), Expect = 8e-23 Identities = 177/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 41420 ATGGCTAAATCCCCAGCAGAACGCAAAGCCGCGCAGCGCGCGCGGCAGTCCGCCGCCGGT 41479 ||| ||||||||||||||||||| |||||||| ||||| | ||| ||| | || || Sbjct 7632 ATGCCTAAATCCCCAGCAGAACGTAAAGCCGCCCAGCGTGAGCGCCAGCGGGAGGCTGGC 7691 Query 41480 GAGCGCAAGCTTGAACTGGTGCTGGATGCTCAGGAACTGGACATGCTGGCGCGGAACTGC 41539 | |||| ||||||| || ||| |||||||||||||||||||| ||||||||| Sbjct 7692 GTAACCAAGTTTGAACTTAACCTCGATACTCAGGAACTGGACATGCTGCGCCGGAACTGC 7751 Query 41540 GCCGCCCGGCGCCCTGGGCGTGCGCCGTATGAAATGTCTGAGTACATCGCGATGCTGATT 41599 || |||| || || | || || || ||| ||||| ||| | ||||||| Sbjct 7752 GCTTTAAGGCGACCAGGCAAAGATCCCTACGACATGGACGAGTATATCCAGTTGCTGATC 7811 Query 41600 CGCCAGGATGATGCACGCGTTCGTGGGCGTATCAAATCTATCAGCGCTAACCGCTGCGGG 41659 |||||||| || || | || || ||| || ||||| |||| | || || ||| Sbjct 7812 CGCCAGGACGACGCCAGAGTACGCCAGCGGATTAAATCGCTCAGTAAACAACGGTGTGGG 7871 Query 41660 AAGTGCGGTGA 41670 ||||| || || Sbjct 7872 AAGTGTGGCGA 7882 >seq2782 Length=6651 Score = 114 bits (126), Expect = 3e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 28631 ACCGATACCAAACTGAAAAACCTGAAGCCTCAGGACAAACTCTATAAAGTTTCTGACCGT 28690 || || || ||||| ||||| || |||||| ||||||||||| || ||| | || ||| Sbjct 1462 ACAGACACTAAACTAAAAAATCTTAAGCCTTCAGACAAACTCTACAAGGTTACAGATCGT 1403 Query 28691 GACGGGCTGTACGTAGCCGTGCTCATATCAGGCTCTGTCTCGTTCCGCTATGACTACAGA 28750 || ||||||||||| || || || | | || ||| || ||||||||||||||||| Sbjct 1402 GATGGGCTGTACGTGGCGGTTCTTAAGACGGGTGTTGTATCATTCCGCTATGACTACAGG 1343 Query 28751 ATCAACGGCCGCCGGGAAACTCTGGTGATTGGTCAGTATGGTCGTGACGGTATCAGCCTG 28810 || ||||| | | ||||| || || ||| |||| || ||| |||||| | ||| Sbjct 1342 ATAAACGGGAGAAGAGAAACGCTAACCATCGGTAAGTACGGGCGTAGCGGTATTAACCTA 1283 Query 28811 GCGGAAGCGCG 28821 || ||||| || Sbjct 1282 GCCGAAGCACG 1272 >seq3956 Length=1013 Score = 100 bits (110), Expect = 8e-17 Identities = 175/255 (69%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 20808 GTTACCCATTTACGGAAACGGTAGGGAATAGTCCCAGGTGTTACTGCATCGCGGCAGCGC 20867 |||||||| || ||||| || | ||| | || || | | || || || |||||||| Sbjct 361 GTTACCCACTTGCGGAAGCGATGGGGCAGGGTGCCTTGCTTCACAGCGTCACGGCAGCGG 420 Query 20868 AGGATCAGAGTATAGAGGCCGGATTCGTTTATGACATTAACGGTCTGACTACCTTTTACG 20927 || | || || | | |||||||||| |||| | | | ||| | ||| | Sbjct 421 AGTACCAAGGTGAACATGCCGGATTCGGAGATGATAGCTAAGTCCTGCCGTCCTCCAGGG 480 Query 20928 GTGTAAGTTGAACTTACACCCTTCTCATCATCATCTAATGCTTTCAACGACATGCGGGAG 20987 |||||| ||||||||||| ||||||| ||||| || ||||||| | |||||||| || Sbjct 481 GTGTAAATTGAACTTACATCCTTCTCGTCATCGTCCAATGCTTGTAGAGACATGCGAGAA 540 Query 20988 TTAGTCAACCCAAGAGCTTTGCAAACGTCTGATGCAGCAAACCATGGATTACCATCAATG 21047 || || | | | |||| | ||||| || ||| ||||||| || | | ||| ||| Sbjct 541 TTCGTTAGCTCCAGAGAATCACAAACATCCTTGGCAACAAACCAAGGCTCATCATTAATA 600 Query 21048 TTGAACATGCGAACA 21062 ||| |||||||| Sbjct 601 ATGATAGTGCGAACA 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133504108989952