Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27]
3,968 sequences; 388,752,668 total letters
Query= NC_031077.1
Length=41760
Score E
Sequences producing significant alignments: (Bits) Value
seq2625 428 1e-115
seq3361 271 2e-68
seq3702 120 8e-23
seq2782 114 3e-21
seq3956 100 8e-17
>seq2625
Length=4495
Score = 428 bits (474), Expect = 1e-115
Identities = 1017/1521 (67%), Gaps = 22/1521 (1%)
Strand=Plus/Minus
Query 17487 TGGACGAAGCGAGCAGAGAGAATGAGCAGGCAATACAGGATTCCAGCCTTTTTGACGTAG 17546
|||||| || | | | || | ||| | |||| || ||| ||||||||||||| || |
Sbjct 1510 TGGACGCTGCAAACCGGGATATAGAGAACGCAAAGCATGATGCCAGCCTTTTTGAGGTGG 1451
Query 17547 CTGTAGCGTGTTTCTTGAGAGGATAATTGAATGAGACAGGAATGTATTCAGGCCGTGCAA 17606
| || || ||| | || ||||| |||||| | |||||||| || ||||| ||
Sbjct 1450 CGGTGAGTTGCTTCCTCAGGAGATAAAACGATGAGAGACGAATGTATCCAAGCCGTAAAA 1391
Query 17607 CAGGCCGCACAGCGCACTCTTA-CAGCCCGAGAAATACAGAATATCGAAGACCGCATTTA 17665
||| | |||||| || ||| |||| |||||||| ||| ||||| ||||||
Sbjct 1390 GCGGCATCGCAGCGC-CTATTAACAGCGGCTGAAATACAAGGTATTGAAGATCGCATTGT 1332
Query 17666 CCGCAATATGCGATCTATCGCCCGTGACGATCCGATGTCATGGCGTCAACTTAACGACGC 17725
|| ||||| | | || || | || || | |||||||| | | || |
Sbjct 1331 GAAAAACATGCGTAATTTGGCACGAAATGACCCTACTTCATGGCGGGCTATGAGTGAATC 1272
Query 17726 TGAACGCCTGCGCCGCGCCGGGCAACTGGCGGCTGAAGAGTTGCAGCGAGAAGCGGCACT 17785
|| || |||||||||| || || || || || || || ||| |||||| ||| | |
Sbjct 1271 AGAGCGGATGCGCCGCGCTGGTCAGCTTGCCGCCGATGAATTGGGGCGAGAGGCGCTATT 1212
Query 17786 GAAAAAACGCCGTGTCGCGCTTACCATCGCAGCGCGTCAGCGCCTTGACAACTTCATTAA 17845
|||||||| ||||| ||| | ||||| || ||||| || || | ||| | || ||
Sbjct 1211 AAAAAAACGTCGTGTAGCGTTAACCATTGCTGCGCGGCAACGGTTGGACGCTTATATCAA 1152
Query 17846 CAGTTATCAGGGTGCTGACGGAAAGCTAGGCGCACTCAACCGCACGATCGCCTTCAGCGC 17905
|| | || | || || | || || ||||| ||||| || || ||
Sbjct 1151 AGACTACAAAGGGAAAAATGGCGCACTGGAAGCGCTAAACCGTACGATAGCATTTCATGC 1092
Query 17906 CGACGGTAAATCAAACTTTCTGTCTGTTGAGTCTCGAACGAAAGCGACGCGTGATTACGC 17965
||||| || | | ||||| || || ||||| || | || || || |||||||| ||
Sbjct 1091 AGACGGCAAGGCCCATTTTCTTTCCGTAGAGTCACGCGCAAAGGCAACCCGTGATTATGC 1032
Query 17966 ATTAAGCCAGTTGCAGGAAGCATTTGAAGCCGTTGACCCTCGTTTCTTTGGCCTGT---T 18022
| || ||||| ||||| |||||||||||| || || ||||| || || || |
Sbjct 1031 GCTTAGTCAGTTAGAGGAATTATTTGAAGCCGTCGATCCGCGTTTTTT---CCAGTGGCT 975
Query 18023 TGAAGATGAAGCCGGC-GTGCGCGATCTGGTGTTTGAGATGCGCGGGCAGAATACTGGCA 18081
||||| |||| || || || ||||| | | ||| ||||| |||||| | || | |
Sbjct 974 AGAAGAC-AAGCAGGGAGTTCGGGATCTTATTTATGAAATGCGTGGGCAGGACACCAGAA 916
Query 18082 ATGCGAAGGCCAGAAAAGGGGCGAAAGCCTGGGGGGAGGTTACTGAACTGCTGCGCCGCC 18141
|||| | || | |||||||||| |||| ||| | ||| ||||| | || ||| |
Sbjct 915 ATGCCAGAGCTAAAAAAGGGGCGCAAGCATGGAAGCGGGTATCTGAATTACTTCGCACAC 856
Query 18142 GCTTCAATGATGCCGGTGGCGATATCGGCTACCTGGAAAACTGGGGTATACCTCAGCACC 18201
| || || ||||||||||| ||||| || || |||| | ||||| | |||||||| |
Sbjct 855 GGTTTAACGATGCCGGTGGGGATATTGGTCACTTGGAGGATTGGGGGCTTCCTCAGCATC 796
Query 18202 ACTCGATGGAAAAGGTTGGTGCTGTATCGAAAGATAAATGGGTAAGCGATGTGATCGGCA 18261
|||| ||||| || |||| | |||||||||| | ||||| | ||| ||||| |
Sbjct 795 ACTCAATGGATAAAGTTGCCAAAGCATCGAAAGATGAGTGGGTTGGGTTTGTTATCGGAA 736
Query 18262 AACTCGATCGCAAATATTACATCCGCGCCGACGGCCAGTTGATGAATGATACTGAGTT-- 18319
||||||| || || | ||||| | ||||| | |||| ||| ||||| |
Sbjct 735 AACTCGACCGTAATAAATACATTAAAGAAAACGGCGAACCAATGACAGATGCTGAGATTA 676
Query 18320 GTCATCTTTTCTCGGTGAAGCCTATAACACGATTGCCACAGGCGGCCTTAATAAACTCAC 18379
|| || || || ||| | || ||| | || || ||||| ||||| | |||||||||
Sbjct 675 GTAAT--TTCCTTGGTAATGCTTATGAAACCATAGCCACGGGCGGGATAAATAAACTCGG 618
Query 18380 TGATACCGGTATGCGTATTTCCGGTGCGCGGGCAAACCGTGGCAACGCGTCACGCCAGAT 18439
||||| ||| || | | || |||||||| |||| | || | ||| |||||||||
Sbjct 617 TGATAAAGGTCTGAGGGTATCAGGTGCGCGATCAAATAGGGGTAGCGCTGAACGCCAGAT 558
Query 18440 CCACTTTAAAGACGCTGATTCATACCTTCAGTACCAGCAGATGTATGGCGACAGGTCACT 18499
||| ||||| || ||||| ||||| | | || |||||| | || || | || ||
Sbjct 557 CCATTTTAACGATGCTGAATCATATTTGGATTATCAGCAGCGTTTCGGGGAAAAATCGCT 498
Query 18500 CTGGGAAATCATGGTAGGGCACCTGGAAGGTATCAGCAAAGACATTGCGCTGGTGGAGAC 18559
||||| || | || ||| | || || || |||||||| ||||| ||||| || ||
Sbjct 497 TTGGGATATTCTCGTCAACCACATCGAGGGGATTAGCAAAGATATTGCCCTGGTTGAAAC 438
Query 18560 ATACGGGCCAAACCCGGATCACGTGTTCCGATCTCTGCTTGACCAGACGAAATCAG--AG 18617
||||| || ||||| || ||||| ||||| | ||||| || || | ||| |
Sbjct 437 CTACGGCCCTAACCCCGACCACGTTTTCCGTGCGCTGCTGGA--TGAATTGACCAGTAAA 380
Query 18618 ACAGCCACGGCTAACCCGCAGAACACAGGCAAAATAGAACGGC-AGGCGAACAGCACAGA 18676
|| || |||| || || | | | || | || || | | | |||| | || ||
Sbjct 379 ACCGCAACGGAAAATCCTCGCCGCGCTGGAAGCATTGAGAGTCTTAGTGAAC-GTACTGA 321
Query 18677 GAACCTGTACAACTTCATTTCTGGAAAGACGCAACCTGTAGCGAATCCGCA-CATCGCTC 18735
||||| || ||||| | | ||||| || | || |||| || ||| | || ||||
Sbjct 320 AAACCTCTATAACTTTGTCGCAGGAAAAACCCGGCCAATAGCTAA-CCGAAGTATTGCTC 262
Query 18736 GCTGGTCTGACAATATCCGCAACTGGATGGTTGCCAGCCGTCTCGGTTCCGCGCTTCTGT 18795
|||||||||| | | ||||||||| | ||||| || || ||||| ||||| |
Sbjct 261 GCTGGTCTGATGACCTGCGCAACTGGTTAATTGCCTCTCGCCTGGGTTCTGCGCTGGTCA 202
Query 18796 CATCATTCTCTGATCTCGGAACCATGTACCTGTCTGCGAAGGTTACCAACCTGCCAATGA 18855
| || | || ||| ||| || |||||||| | || || | |||||| || |||
Sbjct 201 CGTCGCTATCAGATAACGGCACGATGTACCTCACCGCTCGAGTAAACAACCTTCCTATGG 142
Query 18856 ACCAGTTATTTCGCAACCAGTTAGAGGCAATGAACCCCGCTAACCGCACGGAACTGGCGC 18915
|| | || || |||||| ||| || | ||||| | || |||||| ||
Sbjct 141 CGCAACTCTTACGTAACCAGCTAGCAGCGTTCAACCCTACAAATAAAGACGAACTGAGGC 82
Query 18916 GGGCACGCCGGGCTGGTCTGGCAATGGAATCACTACTTGGCAGCGTTAACCGCTGGGCGA 18975
||| || || || || |||| ||||| | || |||| |||| |||||| ||||| |
Sbjct 81 TGGCGCGTCGTGCAGGATTGGCGATGGATACGCTTATTGGTAGCGCTAACCGTTGGGCTA 22
Query 18976 TGGATAATATGGGGCCATCTG 18996
||| ||||||||||||||||
Sbjct 21 CGGACAATATGGGGCCATCTG 1
Score = 87.8 bits (96), Expect = 5e-13
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 15996 TCAATGACACTTCAGTTTCATACATTGCCGAGCAGCGAAAACTCGCAGAGCAGCAGGTAA 16055
|||||||||| |||| | || || |||||||||||||| |||||| |||| ||||
Sbjct 2995 TCAATGACACGTCAGAATTATTTATCAAAGAGCAGCGAAAACTGGCAGAGGAGCAAGTAA 2936
Query 16056 AGCGGCTGACGCCTGATTCCGCGACAACCGGCACAGCCGGGCAGGTTCTTTATGGGCTGT 16115
|| ||||||| || | | ||||| || || |||||||| |||||| || || |
Sbjct 2935 GACGTTTGACGCCAGACCCTGGAACAACGGGTACCGCCGGGCAAATTCTTTTTGCTCTCT 2876
Query 16116 TCGATATGGGTGGGCAGGCTGTTGTTGGTACAACGCTCGGTGGTCCTGTCGGCGGCGCGG 16175
| ||||| |||||||| || | || | | ||||| | | |||| || |
Sbjct 2875 CACAAATGGGAGGGCAGGCGGTGGCAGGCTCTTTAGTGGGTGGGCTTCCGGGCGCAGCCG 2816
Query 16176 CGGCCGTTACTTCTCTACAGGGGTTTTCTGAATTTGAA 16213
| ||||| | || | || ||||| ||||| | ||||
Sbjct 2815 CTACCGTTGGTGCTTTGCAAGGGTTCTCTGATTATGAA 2778
>seq3361
Length=1041
Score = 271 bits (300), Expect = 2e-68
Identities = 444/640 (69%), Gaps = 0/640 (0%)
Strand=Plus/Plus
Query 19411 CAGGCATCCAGCGCGGGACATGGAAGGGAGAACTAACCCGTAGCGTATTCCTGTTTAAGT 19470
||||| | |||||||| || |||||||| || || ||||| || || || ||||| |
Sbjct 2 CAGGCTTACAGCGCGGAACGTGGAAGGGTGAGCTGGTTCGTAGTGTGTTTCTTTTTAAAT 61
Query 19471 CTTTCCCGATCTCAGTTGTCATGCGTCACTGGTCGCGTGCAATGGGAATGCCGTCTGCCG 19530
| |||||||| | || || ||||| || ||| || | || | | || ||||| |
Sbjct 62 CATTCCCGATAGCTGTAGTGATGCGCCATTGGGCGAGAGCGTTTAACACTCCTTCTGCTG 121
Query 19531 GTGGGCGTGCGGCATACATCGCGACGTTTATCGCCAGTACAACCATTCTTGGCGCGCTGT 19590
| || || ||||| || | || ||||| | || || || || | ||||| || |||
Sbjct 122 GCGGTCGAGCGGCCTATCTTGCAGCGTTTTTGGCAAGCACTACGGTGCTTGGTGCCATGT 181
Query 19591 CGCAGCAGTTAAACGATATGGCATCAGGCAGGAACCCGCGTGATATGACCGGTGATGATG 19650
| ||||| ||||||||||| ||||| | ||| || || || ||| | |
Sbjct 182 CCCAGCAAATAAACGATATGCTTTCAGGGAAAGACCTCCGCGAAGCTTTTGGCGATAAAG 241
Query 19651 CCGCAAAATTCTGGCTTGGTGCATTACTGAAAGGTGGTGGTCTTGGCCTGTATGGCGATT 19710
|| | | |||||| || ||| ||||| |||||||||||| | || || |||||||| |
Sbjct 242 CCCCTCAGTTCTGGATTAATGCGTTACTTAAAGGTGGTGGTATGGGGCTTTATGGCGACT 301
Query 19711 TCCTTCTGTCTGATCACACTAGGTACGGAAGTGGTGCGCTGGCGTCGATGCTTGGCCCGG 19770
|| | | || ||||| || | ||||| | ||| ||||||| ||||||||||| |
Sbjct 302 TCTTCTTTTCAGATCATACCCGCTACGGCTCCGACGCGATGGCGTCAATGCTTGGCCCCG 361
Query 19771 TGGCTGGTCTTGTTGATGATGTCGTTAAGATTGCCCAGGGTATCCCGCTTAATGCTGTAG 19830
| ||||| | | | ||||| ||||| |||||||||| ||||| || ||||| || |
Sbjct 362 TTGCTGGGTTAATCGGTGATGCGGTTAAACTTGCCCAGGGCATCCCCCTGAATGCCGTTG 421
Query 19831 AAGGAAAATACGAACAAACTGGCGGTGATCTGGTGAAACTTGGCAAAGGACTGACGCCTG 19890
| |||||| || ||||| ||||| ||| | || ||| | | |||||| |||| || |
Sbjct 422 AGGGAAAACCAGAGCAAACAGGCGGCGATGTCGTTAAATTCGTCAAAGGGCTGATACCCG 481
Query 19891 GCGCGAATATCTGGTATCTCAAAGCCGCCATAGATCACATGATCTTCAACCAGATGCAGG 19950
| || | |||||| ||||| || | ||||| ||| | || || ||| ||||||
Sbjct 482 GGCAAAACCTTTGGTATACAAAAGCAGCATTGGATCATATGTTTTTTAATCAGTTGCAGG 541
Query 19951 AGTATTTTTCTCCTGGCTATCTGCGTAAGATGGAACAACGTTCGAAGAAAGAATTTAACC 20010
| || ||||| || || |||||| ||||| | | || || |||||||| |
Sbjct 542 AATACTTTTCGCCGGGTTATCTGAACCGAATGGAGCGCAGATCCCAGCGTGAATTTAATC 601
Query 20011 AGACATACTGGTGGCGGCCGCAGGACACGCTACCGCAATA 20050
| || || |||||||| ||||| ||| | | || |||||
Sbjct 602 AAACCTATTGGTGGCGTCCGCAAGACGCTATGCCACAATA 641
>seq3702
Length=11964
Score = 120 bits (132), Expect = 8e-23
Identities = 177/251 (71%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 41420 ATGGCTAAATCCCCAGCAGAACGCAAAGCCGCGCAGCGCGCGCGGCAGTCCGCCGCCGGT 41479
||| ||||||||||||||||||| |||||||| ||||| | ||| ||| | || ||
Sbjct 7632 ATGCCTAAATCCCCAGCAGAACGTAAAGCCGCCCAGCGTGAGCGCCAGCGGGAGGCTGGC 7691
Query 41480 GAGCGCAAGCTTGAACTGGTGCTGGATGCTCAGGAACTGGACATGCTGGCGCGGAACTGC 41539
| |||| ||||||| || ||| |||||||||||||||||||| |||||||||
Sbjct 7692 GTAACCAAGTTTGAACTTAACCTCGATACTCAGGAACTGGACATGCTGCGCCGGAACTGC 7751
Query 41540 GCCGCCCGGCGCCCTGGGCGTGCGCCGTATGAAATGTCTGAGTACATCGCGATGCTGATT 41599
|| |||| || || | || || || ||| ||||| ||| | |||||||
Sbjct 7752 GCTTTAAGGCGACCAGGCAAAGATCCCTACGACATGGACGAGTATATCCAGTTGCTGATC 7811
Query 41600 CGCCAGGATGATGCACGCGTTCGTGGGCGTATCAAATCTATCAGCGCTAACCGCTGCGGG 41659
|||||||| || || | || || ||| || ||||| |||| | || || |||
Sbjct 7812 CGCCAGGACGACGCCAGAGTACGCCAGCGGATTAAATCGCTCAGTAAACAACGGTGTGGG 7871
Query 41660 AAGTGCGGTGA 41670
||||| || ||
Sbjct 7872 AAGTGTGGCGA 7882
>seq2782
Length=6651
Score = 114 bits (126), Expect = 3e-21
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 28631 ACCGATACCAAACTGAAAAACCTGAAGCCTCAGGACAAACTCTATAAAGTTTCTGACCGT 28690
|| || || ||||| ||||| || |||||| ||||||||||| || ||| | || |||
Sbjct 1462 ACAGACACTAAACTAAAAAATCTTAAGCCTTCAGACAAACTCTACAAGGTTACAGATCGT 1403
Query 28691 GACGGGCTGTACGTAGCCGTGCTCATATCAGGCTCTGTCTCGTTCCGCTATGACTACAGA 28750
|| ||||||||||| || || || | | || ||| || |||||||||||||||||
Sbjct 1402 GATGGGCTGTACGTGGCGGTTCTTAAGACGGGTGTTGTATCATTCCGCTATGACTACAGG 1343
Query 28751 ATCAACGGCCGCCGGGAAACTCTGGTGATTGGTCAGTATGGTCGTGACGGTATCAGCCTG 28810
|| ||||| | | ||||| || || ||| |||| || ||| |||||| | |||
Sbjct 1342 ATAAACGGGAGAAGAGAAACGCTAACCATCGGTAAGTACGGGCGTAGCGGTATTAACCTA 1283
Query 28811 GCGGAAGCGCG 28821
|| ||||| ||
Sbjct 1282 GCCGAAGCACG 1272
>seq3956
Length=1013
Score = 100 bits (110), Expect = 8e-17
Identities = 175/255 (69%), Gaps = 0/255 (0%)
Strand=Plus/Plus
Query 20808 GTTACCCATTTACGGAAACGGTAGGGAATAGTCCCAGGTGTTACTGCATCGCGGCAGCGC 20867
|||||||| || ||||| || | ||| | || || | | || || || ||||||||
Sbjct 361 GTTACCCACTTGCGGAAGCGATGGGGCAGGGTGCCTTGCTTCACAGCGTCACGGCAGCGG 420
Query 20868 AGGATCAGAGTATAGAGGCCGGATTCGTTTATGACATTAACGGTCTGACTACCTTTTACG 20927
|| | || || | | |||||||||| |||| | | | ||| | ||| |
Sbjct 421 AGTACCAAGGTGAACATGCCGGATTCGGAGATGATAGCTAAGTCCTGCCGTCCTCCAGGG 480
Query 20928 GTGTAAGTTGAACTTACACCCTTCTCATCATCATCTAATGCTTTCAACGACATGCGGGAG 20987
|||||| ||||||||||| ||||||| ||||| || ||||||| | |||||||| ||
Sbjct 481 GTGTAAATTGAACTTACATCCTTCTCGTCATCGTCCAATGCTTGTAGAGACATGCGAGAA 540
Query 20988 TTAGTCAACCCAAGAGCTTTGCAAACGTCTGATGCAGCAAACCATGGATTACCATCAATG 21047
|| || | | | |||| | ||||| || ||| ||||||| || | | ||| |||
Sbjct 541 TTCGTTAGCTCCAGAGAATCACAAACATCCTTGGCAACAAACCAAGGCTCATCATTAATA 600
Query 21048 TTGAACATGCGAACA 21062
||| ||||||||
Sbjct 601 ATGATAGTGCGAACA 615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133504108989952
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