Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq2351 208 8e-49 seq3176 158 1e-33 seq3532 154 2e-32 >seq2351 Length=10305 Score = 208 bits (230), Expect = 8e-49 Identities = 332/474 (70%), Gaps = 2/474 (0%) Strand=Plus/Minus Query 141245 CATCAGGTTATTAATCTGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACC 141304 |||||| || || | ||| ||||| ||||| | ||||| | ||||| | || || || Sbjct 2996 CATCAGCTTGTTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCC 2937 Query 141305 TTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAG 141364 ||||||||| || || || ||| |||| ||||||| ||||| | || || ||| Sbjct 2936 ACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAA 2877 Query 141365 TGTCGCCGCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTG 141424 || ||||| || || || || || || || ||||||||||| ||||| || ||||| || Sbjct 2876 CGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATG 2817 Query 141425 TTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCCTC 141484 ||| ||||||||||| |||||||| ||||||| | ||| |||| Sbjct 2816 TTTATAGAAAGGAATACAGCCAGTATGGAATGCTTCACCACCGCGAATCGGGCTACCCAG 2757 Query 141485 GGCGCGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAAT 141544 || ||||| || || ||||| || ||||| ||||||| | ||||||| || Sbjct 2756 CGCACGAATACGACCGGCGTTAATGCCGATACCGGCACGCTGTGAAACGTATTTCACGAT 2697 Query 141545 TGATGCAGCAGCT-TCGTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATG 141603 | | | || | ||||||| |||| || || || || | ||||| | |||||| | Sbjct 2696 AG-CACTGGAGGTGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGG 2638 Query 141604 AACTGAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCT 141663 | |||||||| || || || ||||| || || ||||| || || |||||||||||||||| Sbjct 2637 AGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCAATGAAATCT 2578 Query 141664 TTTTAGTAGAAACTGCATCATAGAAACGAATAACGTTTGCTAAACGATTTTCGC 141717 | ||||||| || |||||||| || | |||| | | ||| |||||| Sbjct 2577 TGAAGGTAGAAATCGCGTCATAGAAGCGTTTGACGTAATCCAGACGCGTTTCGC 2524 >seq3176 Length=18404 Score = 158 bits (174), Expect = 1e-33 Identities = 147/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 59989 ATTATAGTGCCTCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGG 60048 |||| | || || ||||||||||||| |||||||| ||||||||||| ||||| | Sbjct 6314 ATTACATTGACTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCG 6373 Query 60049 AGTTAAAGCGCACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGAT 60108 |||| |||||||| || || || |||||||| ||||| | |||||| ||||||||||| | Sbjct 6374 AGTTGAAGCGCACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGT 6433 Query 60109 GCTCAACCGCGTCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGC 60168 | || | || |||| ||| |||| || || |||||| ||||||||||| ||||| | Sbjct 6434 GTTCCATGGCATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCAC 6493 Query 60169 CTTCAAT 60175 |||| || Sbjct 6494 CTTCGAT 6500 >seq3532 Length=11862 Score = 154 bits (170), Expect = 2e-32 Identities = 138/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60000 TCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGC 60059 || ||||||||||| | || ||||| || ||||||||||| |||| ||||| || ||| Sbjct 11160 TCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATGAGTTGAAACGC 11219 Query 60060 ACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCG 60119 || || || || |||||||| ||||| | |||||||||||||||||| || | ||||| Sbjct 11220 ACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGTGTTTTACCGCA 11279 Query 60120 TCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 60172 || ||| ||||| || ||||| ||||| ||||||||||| || || ||||| Sbjct 11280 TCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCCCTTC 11332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538315698216960