Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq3532 187 3e-42 seq3176 141 1e-28 seq2351 95.1 1e-14 >seq3532 Length=11862 Score = 187 bits (206), Expect = 3e-42 Identities = 150/181 (83%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 || || |||||||||||||| || |||||||| |||||||| ||||||||||| || || Sbjct 11329 GGGGGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACGCTGGAAGATGCGGTAAAA 11270 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 || || |||||||| |||||||||||||||||||| || ||||||||||| || || ||| Sbjct 11269 CACCCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGTTATGCAGTGCGTTTCAAC 11210 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 142720 || |||| || |||||||| |||||||| || | ||||| || ||||| || || ||| Sbjct 11209 TCATTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACTTTCACTGAAAGCCTGTAA 11150 Query 142721 T 142721 | Sbjct 11149 T 11149 >seq3176 Length=18404 Score = 141 bits (156), Expect = 1e-28 Identities = 134/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 |||||||||||||||||||| || || || ||||||| ||| ||||| | | Sbjct 6494 GGTGGTCAACACCTGAACGTGAACGTGATGAACCGTGAAATGCTGTTGGATGCCATGGAA 6435 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 || || ||||||||||||||||||||||||||||| || |||||||| || ||||| ||| Sbjct 6434 CACCCGGAAAAATATCCGCAGTTGACCATCCGTGTTTCTGGTTATGCCGTGCGCTTCAAC 6375 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAG 142711 || ||||| |||||||||| |||||||| | ||||| || ||| || Sbjct 6374 TCGCTGACCAAAGAACAGCAGCAAGACGTTATTACCCGTACTTTCACTCAG 6324 >seq2351 Length=10305 Score = 95.1 bits (104), Expect = 1e-14 Identities = 283/431 (66%), Gaps = 12/431 (3%) Strand=Plus/Plus Query 61696 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCTACTCCAATTATGGCAGG 61754 || || ||||| || ||||||| | ||||| |||||||||| || || || ||| | || Sbjct 2550 CGCTTCTATGACGCGATTTCTAC-CTTCAAGATTTCATTGCCAACGCCGATCATGTCCGG 2608 Query 61755 TGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 61814 | ||||| || || || |||||| || || | ||||| ||| || | Sbjct 2609 CGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTGTTGATTGAGTGCGGCGACAGCCT 2668 Query 61815 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 61874 | || |||||| || || | || | |||| |||| | || || ||||| Sbjct 2669 GGATTCCATTAACGCCACCTCCAGTGCTATCGTGAAATACGTTTCACAGCGTGCCGGTAT 2728 Query 61875 AGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGAT---CGGTATGGGCGAAG- 61930 || || |||| ||| ||||||| ||| ||| |||| || |||| Sbjct 2729 CGGCATTAACGCCGGTCGTATTCGTGCGCTGGGTAGCCCGATTCGCGGT---GGTGAAGC 2785 Query 61931 -TTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGT 61989 ||| ||||| || |||||| |||| ||||||||||| || ||||| ||||| || Sbjct 2786 ATTC--CATACTGGCTGTATTCCTTTCTATAAACATTTCCAGACCGCAGTGAAATCCTGC 2843 Query 61990 TCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAA 62049 || || || ||| | || || || || || || || ||| ||| ||||||| | ||| Sbjct 2844 TCACAGGGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTTTACCCGCTGTGGCATCTGGAA 2903 Query 62050 GTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACAT 62109 || || | ||| | || ||||| || ||| |||||||| | ||||| | || || Sbjct 2904 GTGGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGCGTGGAAGGCAACCGCGTGCGTCAC 2963 Query 62110 ATGGACTACGG 62120 | || ||||| Sbjct 2964 CTCGATTACGG 2974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542632284103680