Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq2351 214 2e-50 seq3532 154 2e-32 seq3176 149 7e-31 >seq2351 Length=10305 Score = 214 bits (236), Expect = 2e-50 Identities = 331/473 (70%), Gaps = 0/473 (0%) Strand=Plus/Plus Query 136329 GCGAAAATCGTTTAGCAAACGTTATTCGTTTCTATGATGCAGTTTCTACTAAAAAGATTT 136388 |||||| ||| | | |||| | || |||||||| || ||||||| ||||||| Sbjct 2524 GCGAAACGCGTCTGGATTACGTCAAACGCTTCTATGACGCGATTTCTACCTTCAAGATTT 2583 Query 136389 CATTGCCAACACCAATTATGTCTGGTGTTCGTACTCCAACCCGCCAGTTCAGTTCATGCG 136448 |||||||||| || || ||||| || || ||||| |||||||| |||||||| || |||| Sbjct 2584 CATTGCCAACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCG 2643 Query 136449 TAGTTATTGAAGGTGGTGATAGTCTTAATTCAATTAACGAAGCCGCTGCATCAATTACGA 136508 | | ||||| | || || || || |||| ||||||| || | | || || Sbjct 2644 TGTTGATTGAGTGCGGCGACAGCCTGGATTCCATTAACGCCACCTCCAGTGCTATCGTGA 2703 Query 136509 AATACATTAGTAAGCGTGCTGGTATTGGTATTAATGCGGGGATGATTCGTGCAGAAGGAT 136568 ||||| || ||||||| ||||| || ||||| || || |||||||| || Sbjct 2704 AATACGTTTCACAGCGTGCCGGTATCGGCATTAACGCCGGTCGTATTCGTGCGCTGGGTA 2763 Query 136569 CAAAAATTGGATTCGGTGAAGTCAAGCATACTGGTGTTATTCCTTTCTGGAAACACTTCC 136628 ||| | ||||||| |||||||| ||||||||||| ||||| |||| Sbjct 2764 GCCCGATTCGCGGTGGTGAAGCATTCCATACTGGCTGTATTCCTTTCTATAAACATTTCC 2823 Query 136629 AAACCGCAGTTAAGTCATGCTCCCAAGGCGGAGTCCGTGGTGGTGCAGCTACACTGTATT 136688 | |||||||| || || ||||| || ||||| || || || || || || || ||| || Sbjct 2824 AGACCGCAGTGAAATCCTGCTCACAGGGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTTT 2883 Query 136689 ATCCGATGTGGCACTTGGAAGTTGAAAACCTCCTCGTACTTAAGAACAACAAAGGTGTAG 136748 | ||| ||||||| ||||||| |||| ||| || || || ||||||||| || || | Sbjct 2884 ACCCGCTGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGCGTGG 2943 Query 136749 ATGAAAACCGTATTCGCCATTTAGATTATGGTGTTCAGATTAATAACCTGATG 136801 | | ||||| | || || | ||||| || || ||| | || || |||||| Sbjct 2944 AAGGCAACCGCGTGCGTCACCTCGATTACGGCGTGCAGTTGAACAAGCTGATG 2996 >seq3532 Length=11862 Score = 154 bits (170), Expect = 2e-32 Identities = 138/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 47305 GAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCGGTT 47364 ||||| || || ||||||||||| ||||| |||| || ||||| || |||||||| Sbjct 11332 GAAGGGGGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACGCTGGAAGATGCGGTA 11273 Query 47365 GAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGCTTC 47424 | ||||| ||||||||||||||| |||| || || ||||| || || || ||||| ||| Sbjct 11272 AAACACCCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGTTATGCAGTGCGTTTC 11213 Query 47425 AACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCACAGA 47477 ||||| ||||| ||||||||||| || ||||| || | ||||||||||| || Sbjct 11212 AACTCATTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACTTTCACTGA 11160 >seq3176 Length=18404 Score = 149 bits (164), Expect = 7e-31 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 47302 ATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCG 47361 || ||||| ||||| ||||||||||| |||||| || || |||| || ||||||| Sbjct 6500 ATCGAAGGTGGTCAACACCTGAACGTGAACGTGATGAACCGTGAAATGCTGTTGGATGCC 6441 Query 47362 GTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGC 47421 | || ||||| |||||||| |||||| |||| || || ||||| || || || |||||| Sbjct 6440 ATGGAACACCCGGAAAAATATCCGCAGTTGACCATCCGTGTTTCTGGTTATGCCGTGCGC 6381 Query 47422 TTCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCACAGAGGCA 47481 |||||||| |||| ||||||||||| |||||||| | ||||||||||| || || Sbjct 6380 TTCAACTCGCTGACCAAAGAACAGCAGCAAGACGTTATTACCCGTACTTTCACTCAGTCA 6321 Query 47482 CTATAATGTC 47491 | |||| || Sbjct 6320 ATGTAATTTC 6311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539870821079040