Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq3839 228 1e-54 seq2689 96.9 5e-15 >seq3839 Length=10135 Score = 228 bits (252), Expect = 1e-54 Identities = 235/305 (77%), Gaps = 2/305 (1%) Strand=Plus/Minus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGA-GAAAGCTGA 196072 |||||||||||| ||||||||||||| | ||| | | || || ||| ||| | || Sbjct 1882 ATGAAACAGTATCTGGAATTGATGCAGAAGGTGCTTGATGAGGGA-ACGCCGAAGGGAGA 1824 Query 196073 CCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAA 196132 | | |||||||| || ||| | || |||||||| | ||||||||||| | |||| | Sbjct 1823 CAGAACCGGCACCGGAACCTTATCGATTTTCGGCCACCAGATGCGTTTCAATCTGCAAGA 1764 Query 196133 AGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTT 196192 || || |||||||| |||||||| | || ||||| || ||||| ||||| ||||| Sbjct 1763 CGGTTTTCCGCTGGTGACCACCAAGCGCTGCCATCTGCGCTCAATCATTCACGAGCTGTT 1704 Query 196193 GTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 196252 ||||||||| ||||| ||||||||| | |||||| | ||||| || || || || || Sbjct 1703 GTGGTTCCTCAACGGTGACACCAACGTTGGCTATCTGCACGACAATAAAGTTAGCATTTG 1644 Query 196253 GGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCGTGC 196312 |||||| ||||| ||||| ||||||||||||| || || ||||||||||||||||| || Sbjct 1643 GGATGAATGGGCCGATGAGAATGGCGATCTTGGGCCGGTATACGGTAAGCAGTGGCGCGC 1584 Query 196313 ATGGG 196317 |||| Sbjct 1583 TTGGG 1579 Score = 143 bits (158), Expect = 4e-29 Identities = 227/323 (70%), Gaps = 2/323 (1%) Strand=Plus/Minus Query 196748 ACTGTCCTGTCAGCTTTACCAGCGCA-GTGCAGACGTCTTCCTCGGTGTCCCGTTCAACA 196806 ||| ||||||||||||||||||||| ||| || || ||||||||| | |||||||| | Sbjct 1409 ACTTTCCTGTCAGCTTTACCAGCGCTCGTGT-GATGTGTTCCTCGGTCTGCCGTTCAATA 1351 Query 196807 TCGCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTG 196866 | || || || ||| |||| || ||| |||| |||||| | | | | | || | Sbjct 1350 TTGCCAGTTATGCACTGCTGGTGCATATGATGGCGCAGCAGTGCGACCTTGAAGTCGGCG 1291 Query 196867 ATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGT 196926 | || |||||||| || || || |||||||||||| |||||| |||| ||| | | Sbjct 1290 ACTTTGTCTGGACCGGTGGTGACACCCATCTGTACAACAACCATATGGAGCAGACGCATT 1231 Query 196927 TGCAGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACCGGATT 196986 |||| || ||||| || | | ||||| || | | || ||||| || | | Sbjct 1230 TGCAACTGAGCCGTGAGCCAAAAGCGCTGCCGAAATTGATCATTAAACGCCGTCCTGCCT 1171 Query 196987 CCATTTTCGACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGAAAGCCACCCACCCA 197046 | | || |||||| ||||||| ||||| ||||| | || ||||| || || ||| Sbjct 1170 CGCTGTTTGACTATCAGTTCGATGATTTCGAAATAGAAGGCTACGATCCGCATCCTGCCA 1111 Query 197047 TTAAGGCACCGGTTGCCATCTAA 197069 | ||||||||||| || || ||| Sbjct 1110 TCAAGGCACCGGTGGCGATTTAA 1088 >seq2689 Length=2575 Score = 96.9 bits (106), Expect = 5e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 1457 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 1516 Query 5547 TGCCAGAGTCGCCACATT 5564 | ||||| |||| ||| Sbjct 1517 AGTCAGAGGAGCCAAATT 1534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770268992762880