Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031128.1 Length=158081 Score E Sequences producing significant alignments: (Bits) Value seq2351 91.5 1e-13 seq2689 84.2 2e-11 >seq2351 Length=10305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 280/429 (65%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 17228 TTCACCAGGCGCTCGAACATGACGCGGTTAATCTGAATCCCATAGTCGATACGGCGTTCA 17287 || |||||||||| |||| | ||| | ||| | || || |||| | || | Sbjct 3013 TTGACCAGGCGCTGATACATCAGCTTGTTCAACTGCACGCCGTAATCGAGGTGACGCACG 2954 Query 17288 CGGTTCTCTTCCAATCCACGGTTGTTTTTGAGAACAACGACATCATCAAATTGATAATGC 17347 ||||| |||||| ||||||||||| || || || | | || | || |||| Sbjct 2953 CGGTTGCCTTCCACGCCACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGC 2894 Query 17348 CAGATGGGAACATAGCATGTTGCCGATCCACCACGGATACCGCCTTGAGAGCAAGACTTC 17407 || | || | | | ||||||| ||| || || | |||||| || ||||| || ||| Sbjct 2893 CACAGCGGGTAAAACAACGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTC 2834 Query 17408 AGGGCACCAGTC---AAATACTTGATGAATGGAAC-CAGACCTGTATGGACCATTTCCCC 17463 | || ||| |||| || ||| |||| ||| || ||||||| ||| || Sbjct 2833 ACTGCG---GTCTGGAAATGTTTATAGAAAGGAATACAG-CCAGTATGGAATGCTTCACC 2778 Query 17464 TTTACGGATAGGGCTACCGATGCCACGAATTGCCCCAACATCGAATCCGATGCCAGCACG 17523 || || |||||||| | ||||||| || | | | ||||| || ||||| Sbjct 2777 ACCGCGAATCGGGCTACCCAGCGCACGAATACGACCGGCGTTAATGCCGATACCGGCACG 2718 Query 17524 TTTGGAAACATAATCCACGATGCTTTTCGCAGTGGCATTAATTGAGTCCAATGTATCACC 17583 | ||||| || | |||||| | | ||||| ||||| || |||| | || || Sbjct 2717 CTGTGAAACGTATTTCACGATAGCACTGGAGGTGGCGTTAATGGAATCCAGGCTGTCGCC 2658 Query 17584 AGTTTTGATTAATACACAAGAGCTGAACTGTCGGGTCGGGGTGCGGACGCCGGACATAAT 17643 | || || || || ||||||||||| ||||| ||||| || ||||||||||| || Sbjct 2657 GCACTCAATCAACACGCAGGAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGAT 2598 Query 17644 AGGTGTTGG 17652 || ||||| Sbjct 2597 CGGCGTTGG 2589 >seq2689 Length=2575 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 102158 TGTAGTTCAGTCGGTAGAACGGCGGTCTGTTAAACCGTATGTCGCAGGTTCAAGTCCTGC 102217 ||||||||||||||||||||||||| ||||||| ||||||||| | ||||| ||||| | Sbjct 1460 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 1519 Query 102218 CATCGTCGCCAAAT 102231 || | ||||||| Sbjct 1520 CAGAGGAGCCAAAT 1533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505706115732480