Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031902.1 Length=125114 Score E Sequences producing significant alignments: (Bits) Value seq3176 141 7e-29 seq3532 102 7e-17 seq2333 82.4 6e-11 >seq3176 Length=18404 Score = 141 bits (156), Expect = 7e-29 Identities = 143/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 28882 ATTATATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATG 28941 |||| || | |||||| || ||||| |||||||||| | ||| ||||| |||| | Sbjct 6314 ATTACATTGACTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCG 6373 Query 28942 CGTTAAATCGAACAGCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGAT 29001 ||| || || || ||||| ||||| ||||||||||||||||| ||||||||||| || | Sbjct 6374 AGTTGAAGCGCACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGT 6433 Query 29002 GTTTCTGCGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCAC 29061 ||| | |||||||| ||| |||||| | | ||| || || || ||||| ||||||| Sbjct 6434 GTTCCATGGCATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCAC 6493 Query 29062 CCTCGA 29067 | |||| Sbjct 6494 CTTCGA 6499 >seq3532 Length=11862 Score = 102 bits (112), Expect = 7e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 28895 AGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATGCGTTAAATCGAAC 28954 ||| || ||||| |||| ||||| || ||||| | ||||||| ||| || || || Sbjct 11162 AGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATGAGTTGAAACGCAC 11221 Query 28955 AGCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC 29014 ||||| ||||| ||||||||||||||||| || |||||||| || ||||| |||||| Sbjct 11222 TGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGTGTTTTACCGCATC 11281 Query 29015 CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCCTCGAC 29068 ||| ||||||| | || || || || ||||| || || || || || Sbjct 11282 TTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCCCTTCCAC 11335 >seq2333 Length=8475 Score = 82.4 bits (90), Expect = 6e-11 Identities = 170/252 (67%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 59329 TACGATGCCTGTCAGGGCCTGGAGTATGAAATCAATACGATGTTCAACTCTAATGGTCAA 59388 ||||| |||| ||| ||||| |||||| | |||||| || || | | |||||||| Sbjct 5167 TACGACGCCTTCCAGTCGCTGGAATATGAAGTAAATACGCTGCACACCGCCAATGGTCAG 5108 Query 59389 AGTCCGTTTATTACCTTTGGTTTTGGTCTAGGAACTTCTTGGGAAGCACGTCTTGTACAG 59448 | |||||| | ||||||||||| ||||| || || ||||||| | || || | ||| Sbjct 5107 ACACCGTTTGTCACCTTTGGTTTCGGTCTCGGCACCCGTTGGGAATCGCGCCTGATTCAG 5048 Query 59449 AAAGCAATACTAGAAGTACGTATGGATGGTTTGGGTATCAATAAACGT---ACAGCTATC 59505 || | || || || || | ||| |||| ||| || ||| || || | Sbjct 5047 CAATCCATCCTGCGCAACCGCATTGCCGGTCTGGG---CAAAAACCGTAAAACCGCGGTG 4991 Query 59506 TTCCCTAAACTGGTATTTGTTTTGCGTGAGGGCGTAAACATGAAACCTGGTGATGTTAAC 59565 ||||| |||||||| || | | | || || || || || || ||| ||| ||| Sbjct 4990 TTCCCCAAACTGGTGTTCGCTATCCGCGACGGTGTCAATCACAAGGCTGCCGATCCGAAC 4931 Query 59566 TATGATATCAAG 59577 ||||| |||||| Sbjct 4930 TATGACATCAAG 4919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 400220644393600