Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq2452 100 9e-17 seq3282 96.9 1e-15 >seq2452 Length=2364 Score = 100 bits (110), Expect = 9e-17 Identities = 254/379 (67%), Gaps = 17/379 (4%) Strand=Plus/Minus Query 36416 TTGCTGACCGGAGTCATCACGTTTACCACCAAGCATCTGCATCACGCCGCCCATCTGCGG 36475 |||||| ||| |||| | ||||| |||||||||||||| ||||| || | || Sbjct 2222 TTGCTGCCCGC---CATCCTGCTTACCGCCAAGCATCTGCATTGATCCGCCAATAT-CGA 2167 Query 36476 AATGACAATCTCTGTGGTGTATCTGTCTATTCCGTTGCTG-TCAGTCCATTTACGAGTAC 36534 | || | || || |||||||||||| | || | ||| || ||| || | || | Sbjct 2166 CA--ACTACTTCCGTTGTGTATCTGTCT-TGCCCTGACTGGTCTTGCCACTTCCTTGTGC 2110 Query 36535 GAAGCTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCG 36594 | | ||||| ||||| || ||||||||||| || || || ||||| || || || || | Sbjct 2109 GCAATTGGCCCTCGATATATACCTGCGAACCCTTGCGTAGATATTCACCAGCCACCTCTG 2050 Query 36595 CAAGTTTCCCGAATA---TGACAATACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTG 36651 | | || ||| | | |||| |||||||| || || | || |||| ||||| | Sbjct 2049 CCAACTTTCCGTACAGCGTGAC---GCGATGCCATTCCGTGCGCTCCTTCTGCTCTCCAG 1993 Query 36652 TCTGCTTATCTTTCCACTGCTCAGATGTTGCAACGGAAATGTTGACAATTGCAGAACCTG 36711 ||||||| ||| |||| ||||| || || || | | ||| | | ||| | || Sbjct 1992 TCTGCTTGTCTCTCCATGAATCAGAAGTGGCTACAGTCAGGTTTGCCACTGCCCATCCGC 1933 Query 36712 ATGCTGAATATTTAACTTCAGGGTCGTTTCCGAGAGTTCCGACAATAATTACTTTATTTA 36771 | || || |||| ||||| | ||||| ||| || | ||| ||||| |||| Sbjct 1932 TCGGTGTGTAGCGCACTTTGGGGTCTTGCCCGAGGTGTCCCACGAGAATCACTTTGTTTA 1873 Query 36772 CGCCGC---GTGCCATTTA 36787 |||| | || ||||||| Sbjct 1872 CGCCTCTCTGTCCCATTTA 1854 >seq3282 Length=7904 Score = 96.9 bits (106), Expect = 1e-15 Identities = 179/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 36521 CCATTTACGAGTACGAAGCTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTC 36580 ||||||||| || || || || ||||| | || ||||| || ||||| || |||||||| Sbjct 7521 CCATTTACGCGTGCGCAGTTGACCTTCAACATACACCTGTGAGCCTTTGCGCAGGTATTC 7462 Query 36581 TCCTGCAACTTCCGCAAGTTTCCCGAATA---TGACAATACGATGCCACTCTGTCTGTTC 36637 ||| || ||||| || || || ||| | | |||| || ||||| ||||| | || Sbjct 7461 TCCAGCCACTTCAGCCAGCTTTCCGTACAGCGTGAC---GCGGTGCCATTCTGTGCGCTC 7405 Query 36638 TTTCTTTTCTCCTGTCTGCTTATCTTTCCACTGCTCAGATGTTGCAACGGAAATGTTGAC 36697 ||||| || || |||||||| || ||| || || || || | | | ||| | Sbjct 7404 TTTCTGCTCACCGGTCTGCTTGTCGCGCCAGGTATCTGACGTGGCCAGAGTCAGGTTAGC 7345 Query 36698 AATTGCAGAACC-TGATGCTGAATATTTAACTTCAGGGTCGTTTCCGAGAGTTCCGACAA 36756 || ||| ||| | || | ||| ||||| ||||| | || ||| | ||||||| Sbjct 7344 AACGGCACCACCGTTCGGCAG-ATAACGGACTTCCGGGTCTTGCCCCAGATTCCCGACAA 7286 Query 36757 TAATTACTTTATTTACGCC 36775 ||| |||||||| ||||| Sbjct 7285 GAATCACTTTATTAACGCC 7267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152076033839616