Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10 168 2e-36 seq676 163 7e-35 seq14 150 4e-31 seq29 109 1e-18 >seq10 Length=2352850 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || ||||| || |||||||| ||||| || ||| ||| Sbjct 819438 CAGATCTTCGTGAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTCGAGGCCTCTGAC 819497 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| ||||||||||| ||||||||||| ||||||||| Sbjct 819498 ACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAGCAA 819557 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| ||||| || || ||| | |||||||| | Sbjct 819558 CGTCTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCAGAACCCTTTCTGATTATAATATT 819617 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || || ||||| Sbjct 819618 CAGAAAGAGTCCACCCTTCACCTTGT 819643 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || ||||| || |||||||| ||||| || ||| ||| Sbjct 818982 CAGATCTTCGTGAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTCGAGGCCTCTGAC 819041 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| ||||||||||| ||||||||||| ||||||||| Sbjct 819042 ACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAGCAA 819101 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || |||||||| ||||| || || ||| | |||||||| | Sbjct 819102 CGTTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCAGAACCCTTTCTGATTATAATATT 819161 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || || ||||| Sbjct 819162 CAGAAAGAGTCCACCCTTCACCTTGT 819187 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || ||||| || |||||||| ||||| || ||| ||| Sbjct 819210 CAGATCTTCGTGAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTCGAGGCCTCTGAC 819269 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| ||||||||||| ||||||||||| ||||||||| Sbjct 819270 ACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAGCAA 819329 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || |||||||| ||||| || || ||| | |||||||| | Sbjct 819330 CGTTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCAGAACCCTTTCTGATTATAATATT 819389 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || || ||||| Sbjct 819390 CAGAAAGAGTCCACCCTTCACCTTGT 819415 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || ||||| || |||||||| ||||| || ||| ||| Sbjct 819666 CAGATCTTCGTGAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTCGAGGCCTCTGAC 819725 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| ||||||||||| ||||||||||| ||||||||| Sbjct 819726 ACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAGCAA 819785 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||| | |||||||| | || || | || || ||| | Sbjct 819786 CGTCTGATCTTCGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTCTCAGACTACAACATT 819845 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || ||||| |||| Sbjct 819846 CAAAAGGAATCCACTCTGCA-CTTG 819869 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||| | || || || || ||||| || || ||||| || ||| Sbjct 820122 CAGATTTTCGTGAAAACTTTGACTGGTAAGACTATCACACTTGAAGTGGAGGCATCTGAC 820181 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| ||||| |||||||| || || || || || |||||||| Sbjct 820182 ACGATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAG 820241 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| || |||||||| || ||||| | || || ||| || Sbjct 820242 CGTTTGATCTTCGCTGGTAAACAACTGGAAGATGGCAGAACTCTGTCAGACTACAACATC 820301 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || |||||||||||||| || |||| Sbjct 820302 CAGAAAGAATCAACACTCCA-CTTG 820325 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| ||||||||||| || || ||| ||| ||| Sbjct 820350 CAGATATTCGTGAAGACCCTCACGGGAAAGACGATCACCCTAGAAGTCGAAGCCTCTGAC 820409 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| ||||| || || || || || || |||||||| Sbjct 820410 ACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAGCAG 820469 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || |||||| | || ||||| || || || | ||||| || || Sbjct 820470 CGTTTGATCTTCGCTGGTAAACAGTTGGAGGATGGGAGAACACTCTCTGATTACAATATC 820529 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||| || || || ||||||||| Sbjct 820530 CAGAAAGAGTCCACTCTCCATCTTGTT 820556 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | || || || || || || | ||||| || || ||| Sbjct 818754 CAGATCTTCGTGAAAACCTTGACTGGCAAGACCATTACGTTGGAGGTTGAGGCTTCTGAC 818813 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| ||||||||||| ||||||||||| ||||||||| Sbjct 818814 ACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAGCAA 818873 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| ||||| || || ||| | |||||||| | Sbjct 818874 CGTCTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCAGAACCCTTTCTGATTATAATATT 818933 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || || ||||| Sbjct 818934 CAGAAAGAGTCCACCCTTCACCTTGT 818959 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || ||||| || || || || ||| ||| Sbjct 820806 CAGATCTTTGTAAAGACATTGACTGGGAAGACCATCACACTGGAAGTAGAGGCCTCTGAC 820865 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| ||||||||||| ||||| || || |||||||| Sbjct 820866 ACTATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATTCCCCCAGACCAGCAG 820925 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | || ||||| || || || | ||||| || || Sbjct 820926 CGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGGAGAACACTCTCTGATTACAATATC 820985 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||| || || || ||||||||| Sbjct 820986 CAGAAAGAGTCCACTCTCCATCTTGTT 821012 >seq676 Length=265522 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||||||||| || |||||||||||||| || ||| ||| Sbjct 177639 CAAATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 177580 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || || || ||||| || || ||||| || || |||||||| Sbjct 177579 ACCATCGAGAATGTGAAGGCTAAAATCCAGGATAAGGAGGGAATTCCCCCCGACCAGCAG 177520 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||| ||||| ||||| || |||||| | |||||| | ||||| ||| | Sbjct 177519 AGACTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGCACTCTTTCTGATTACAACATT 177460 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 177459 CAGAAGGAATCTACCCTTCA-CTTG 177436 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||||||||| || || ||||| ||||| || ||| ||| Sbjct 177867 CAAATATTCGTCAAGACCCTCACAGGAAAGACCATAACCCTTGAGGTCGAGGCCTCCGAC 177808 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || || || |||||||| || ||||| || || |||||||| Sbjct 177807 ACCATCGAGAATGTGAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAG 177748 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||| ||||| ||||| || |||||| | |||||| | ||||| ||| || Sbjct 177747 AGACTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGCACTCTTTCTGATTACAACATC 177688 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 177687 CAGAAGGAATCTACTCTTCA-CTTG 177664 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||||||||| || |||||||||||||| || ||| ||| Sbjct 178095 CAAATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 178036 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| ||||| || || ||||| || || |||||||| Sbjct 178035 ACCATCGAGAATGTGAAGGCTAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAGCAG 177976 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||| ||||| || |||||| | |||||| | ||||| ||| | Sbjct 177975 AGATTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGCACTCTTTCTGATTACAACATT 177916 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 177915 CAGAAGGAATCTACCCTTCA-CTTG 177892 Score = 159 bits (176), Expect = 8e-34 Identities = 165/214 (77%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||||||||| || || || || || |||||||||||||| || Sbjct 178557 AAAATGC---AGATATTCGTGAAAACGCTGACGGGCAAGACCATCACCCTCGAGGTCGAG 178501 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || |||||||||||||| || |||||| ||||| || || ||||| || || Sbjct 178500 GCCTCTGATACCATCGAGAACGTGAAGGCAAAGATCCAGGATAAGGAGGGAATTCCCCCA 178441 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| |||| |||||||| |||||||| | ||||| || | |||||| | ||| Sbjct 178440 GACCAGCAGAGACTGATCTTCGCTGGAAAACAATTGGAAGACGGTCGCACTCTTTCTGAT 178381 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || ||||| || || || |||| Sbjct 178380 TACAACATCCAGAAGGAATCTACTCTTCA-CTTG 178348 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||||||||| || || ||||| ||||| || ||| ||| Sbjct 178323 CAGATCTTCGTCAAGACCCTCACAGGAAAGACCATAACCCTTGAGGTCGAGGCCTCCGAC 178264 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || || || |||||||| || ||||| || || |||||||| Sbjct 178263 ACCATTGAGAATGTGAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAG 178204 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||| ||||| ||||| || |||||| | |||||| | ||||| ||| || Sbjct 178203 AGACTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGCACTCTTTCTGATTACAACATC 178144 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 178143 CAGAAGGAATCTACTCTTCA-CTTG 178120 >seq14 Length=2234412 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || || || ||||||||||||||||| || ||| Sbjct 1933401 CAGATCTTCGTAAAAACCCTAACTGGGAAGACCATCACCCTCGAGGTGGAGGCTTCTGAC 1933460 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| || ||||||||||| || || || || || |||||||| Sbjct 1933461 ACAATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAG 1933520 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || ||||| || ||||||||||| |||||| | || || | ||||| ||| | Sbjct 1933521 AGGCTGATTTTCGCTGGTAAACAGCTCGAGGATGGACGCACCCTGTCTGATTACAACATT 1933580 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| ||||| || |||| Sbjct 1933581 CAGAAGGAATCGACACTTCA-CTTG 1933604 >seq29 Length=2726036 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | || || || || |||||||| ||||| || || || Sbjct 1034052 CAGATTTTCGTCAAGACATTGACGGGGAAGACCATCACCCTTGAGGTTGAGGCTTCTGAT 1034111 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||||||||| || || || || ||||| |||||||| Sbjct 1034112 ACGATCGAAAATGTCAAAGCCAAGATTCAGGATAAGGAGGGCATTCCTCCAGACCAGCAG 1034171 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | |||||||| |||||||| | || ||||| | ||||| | || || ||| || Sbjct 1034172 AGGTTGATCTTCGCTGGAAAACAATTAGAGGATGGCCGTACTCTCTCTGACTACAACATC 1034231 Query 178104 CAAAA 178108 || || Sbjct 1034232 CAGAA 1034236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203670002305792