Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq14 123 2e-23 seq676 102 8e-17 seq10 102 8e-17 >seq14 Length=2234412 Score = 123 bits (136), Expect = 2e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||| || || || |||||||| | || |||||||| || || ||||| Sbjct 1933588 TCCTTCTGAATGTTGTAATCAGACAGGGTGCGTCCATCCTCGAGCTGTTTACCAGCGAAA 1933529 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GA 41790 ||||| | ||| ||||| | ||||| || |||||||||| ||| |||| |||| || Sbjct 1933528 ATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC-TGAATTTTGGCTTTGACATT 1933470 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| | ||||||||| | || || || || || || || || ||||| Sbjct 1933469 CTCGATTGTGTCAGAAGCCTCCACCTCGAGGGTGATGGTCTTCCCAGTTAGGGTTTTTAC 1933410 Query 41851 GAAAATCTGCATGTT 41865 ||| ||||||||||| Sbjct 1933409 GAAGATCTGCATGTT 1933395 >seq676 Length=265522 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||| || || || || ||||| | || || |||||||| || ||||| Sbjct 177452 TCCTTCTGAATGTTGTAATCAGAAAGAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAG 177511 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 ||||| | ||| ||||| | ||||| | |||||| ||| |||||| ||||| | Sbjct 177512 ATCAGTCTCTGCTGGTCGGGGGGAATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTC 177571 Query 41792 GACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | |||||| | ||| ||||| | || || || || || || || ||||| ||| Sbjct 177572 TCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACG 177631 Query 41852 AAAATCTGCAT 41862 || || ||||| Sbjct 177632 AAGATTTGCAT 177642 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||| || || || || ||||| | || || |||||||| || ||||| Sbjct 177908 TCCTTCTGAATGTTGTAATCAGAAAGAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAG 177967 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| | ||| ||||| | ||||| | |||||| ||| ||| || ||||| | Sbjct 177968 ATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTAGCCTTCACATTC 178027 Query 41792 GACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | |||||| | ||| ||||| | || || || || || || || ||||| ||| Sbjct 178028 TCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACG 178087 Query 41852 AAAATCTGCAT 41862 || || ||||| Sbjct 178088 AAGATTTGCAT 178098 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||| ||||| || || || || ||||| |||| || | || || || ||||| Sbjct 178364 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAATTGTTTTCCAGCGAAG 178423 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 ||||| | ||| ||||| | ||||| | |||||| ||| ||| ||| ||||| | Sbjct 178424 ATCAGTCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTTGCCTTCACGTTC 178483 Query 41792 GACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | || || | ||| ||||| | || || || || ||||||||||| || ||| Sbjct 178484 TCGATGGTATCAGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGCGTTTTCACG 178543 Query 41852 AAAATCTGCATGTT 41865 || |||||||| || Sbjct 178544 AATATCTGCATTTT 178557 >seq10 Length=2352850 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| ||| |||||||| ||||| || || Sbjct 819662 GCCACCTCGAAGACGCAGGACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAATCAGA 819603 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || ||||||||||| || ||||| ||||| || || ||||| | || Sbjct 819602 AAGGGTTCTGCCATCCTCGAGCTGCTTACCAGCGAAGATCAGACGTTGCTGGTCTGGAGG 819543 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||| |||||| || | || |||| || | | ||||| | ||| | Sbjct 819542 GATTCCCTCTTTGTCC-TGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCGA 819484 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || || || |||| |||||| ||||| ||||||||| Sbjct 819483 CCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTCACGAAGATCTGCATG 819434 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| ||| |||||||| ||||| || || Sbjct 819206 GCCACCTCGAAGACGCAGGACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAATCAGA 819147 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || ||||||||||| || ||||| |||| || || ||||| | || Sbjct 819146 AAGGGTTCTGCCATCCTCGAGCTGCTTACCAGCGAAGATCAAACGTTGCTGGTCTGGAGG 819087 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||| |||||| || | || |||| || | | ||||| | ||| | Sbjct 819086 GATTCCCTCTTTGTCC-TGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCGA 819028 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || || || |||| |||||| ||||| ||||||||| Sbjct 819027 CCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTCACGAAGATCTGCATG 818978 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| ||| |||||||| ||||| || || Sbjct 819434 GCCACCTCGAAGACGCAGGACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAATCAGA 819375 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || ||||||||||| || ||||| |||| || || ||||| | || Sbjct 819374 AAGGGTTCTGCCATCCTCGAGCTGCTTACCAGCGAAGATCAAACGTTGCTGGTCTGGAGG 819315 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||| |||||| || | || |||| || | | ||||| | ||| | Sbjct 819314 GATTCCCTCTTTGTCC-TGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCGA 819256 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || || || |||| |||||| ||||| ||||||||| Sbjct 819255 CCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTCACGAAGATCTGCATG 819206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| ||| |||||||| ||||| || || Sbjct 818978 GCCACCTCGAAGACGCAGGACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAATCAGA 818919 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || ||||||||||| || ||||| ||||| || || ||||| | || Sbjct 818918 AAGGGTTCTGCCATCCTCGAGCTGCTTACCAGCGAAGATCAGACGTTGCTGGTCTGGAGG 818859 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||| |||||| || | || |||| || | | ||||| | ||| | Sbjct 818858 GATTCCCTCTTTGTCC-TGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGCCTCAA 818800 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||| || || || || |||| || || ||||| |||||||| Sbjct 818799 CCTCCAACGTAATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 818751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || ||||| ||||| ||||| || || || | | || || || || || || ||||| Sbjct 820309 TCTTTCTGGATGTTGTAGTCTGACAGAGTTCTGCCATCTTCCAGTTGTTTACCAGCGAAG 820250 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| ||||| ||||| | ||||| || |||||||||| ||| || ||| ||| Sbjct 820249 ATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT----GAC 820194 Query 41792 GA-CACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTT 41847 | | || ||||| | |||||| || | || || || ||||| |||| || || Sbjct 820193 GTTCTCAATCGTGTCAGATGCCTCCACTTCAAGTGTGATAGTCTTACCAGTCAAAGTTTT 820134 Query 41848 TACGAAAATCTGCAT 41862 |||||||||||||| Sbjct 820133 CACGAAAATCTGCAT 820119 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||||| |||| ||||| ||| |||||||| ||||| ||||| || Sbjct 820802 GCCACCTCGAAGACGTAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCTGA 820743 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || | | || || | || || || ||||| || || || |||||||| | || Sbjct 820742 GAGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGTTGGTCTGGAGG 820683 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCA 41813 || | ||| || ||| ||| || ||| | || || ||||| | ||| | Sbjct 820682 AATTCCCTCTTTATCCTGGATCTTCGCCTTGA-CGTTTTCAATTGTGTCAGAGGCCTCTA 820624 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | || || || || || ||||| ||||| || ||||||||||| Sbjct 820623 CTTCGAGTGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAAATCTGCAT 820575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462281069721600