Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaphorina_20citri_20[refseq_20GCF_5F000475195.1_202013-10-22]
161,988 sequences; 485,705,082 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq686 100 2e-16
seq3053 91.5 1e-13
seq1701 87.8 1e-12
seq1195 86.0 5e-12
>seq686
Length=151467
Score = 100 bits (110), Expect = 2e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 42922 TTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATC 42981
||||| | |||||| || |||| || | | | || ||||| |||||||||||||| |||
Sbjct 39215 TTTTGAATATTGTAGTCTGACAGAGTTCTTCCATCTTCCAACTGTTTGCCGGCAAAGATC 39274
Query 42982 AATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCA 43041
|||| ||||||||||| || | |||||| || || ||| ||||||| | |
Sbjct 39275 AATCTCTGTTGATCGGGAGGGATACCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCG 39334
Query 43042 ACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAA 43101
| ||||| | | |||||| || | || || || || || || | |||||| |||||
Sbjct 39335 ATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTCCCTGTCAAAGTTTTGACAAAG 39394
Query 43102 ATTTGCAT 43109
|| |||||
Sbjct 39395 ATCTGCAT 39402
>seq3053
Length=52643
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | ||| ||||| || | || || || || | |||||||| |||
Sbjct 47896 CCACCACGGAGACGTAAGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGAC 47837
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| |||||| | || |||||||| || || || ||||| | || || || || | ||
Sbjct 47836 AGGGTACGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGGTCAGGAGGG 47777
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| |||||| || || |||| |||| || | ||| ||||| | || ||
Sbjct 47776 ATACCTTCCTTGTCTTGGATCTTGGCTTTTACGTTTTCAATAGTGTCAGATGGTTCAACT 47717
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|||| || ||||||||||| || |||||||| || || |||||||||
Sbjct 47716 TCTAGGGTGATAGTTTTTCCAGTGAGAGTTTTGACGAAGATTTGCATT 47669
>seq1701
Length=66225
Score = 87.8 bits (96), Expect = 1e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||| | ||| | ||||| |||| ||| |||||||| | ||||| |||||
Sbjct 18138 CCTCCACGTAATCTGAGGACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCGGAT 18197
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995
|| || | || || |||||||||||||||||||| || | ||||||||| ||
Sbjct 18198 AAGGTTCTGTCATCTTCCAATTGTTTGCCGGCAAAGATAAGTCGCTGTTGGTC 18250
>seq1195
Length=97530
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||| ||||| || |||||||| | ||| |||||| || | ||||| || ||
Sbjct 71657 CCTCCACGAAGTCTCAAGACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 71716
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || | | || |||| ||||| || ||||| |||| ||||||||||||| ||
Sbjct 71717 AGGGTTCTACCATCTTCCAGGTGTTTACCAGCAAAGATCAGACGCTGTTGATCGGGAGGG 71776
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| || || || || ||| | ||||| | ||| ||||| || ||| ||
Sbjct 71777 ATGCCCTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGAAGGCTCCACC 71836
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || || ||||| || || || || || ||||| |||||
Sbjct 71837 TCCAAAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAAATCTGCAT 71883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380616689171304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |