Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaphorina_20citri_20[refseq_20GCF_5F000475195.1_202013-10-22] 161,988 sequences; 485,705,082 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq686 100 2e-16 seq3053 91.5 1e-13 seq1701 87.8 1e-12 seq1195 86.0 5e-12 >seq686 Length=151467 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 42922 TTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATC 42981 ||||| | |||||| || |||| || | | | || ||||| |||||||||||||| ||| Sbjct 39215 TTTTGAATATTGTAGTCTGACAGAGTTCTTCCATCTTCCAACTGTTTGCCGGCAAAGATC 39274 Query 42982 AATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCA 43041 |||| ||||||||||| || | |||||| || || ||| ||||||| | | Sbjct 39275 AATCTCTGTTGATCGGGAGGGATACCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCG 39334 Query 43042 ACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAA 43101 | ||||| | | |||||| || | || || || || || || | |||||| ||||| Sbjct 39335 ATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTCCCTGTCAAAGTTTTGACAAAG 39394 Query 43102 ATTTGCAT 43109 || ||||| Sbjct 39395 ATCTGCAT 39402 >seq3053 Length=52643 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | ||| ||||| || | || || || || | |||||||| ||| Sbjct 47896 CCACCACGGAGACGTAAGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGAC 47837 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || |||||||| || || || ||||| | || || || || | || Sbjct 47836 AGGGTACGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGGTCAGGAGGG 47777 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| |||| || | ||| ||||| | || || Sbjct 47776 ATACCTTCCTTGTCTTGGATCTTGGCTTTTACGTTTTCAATAGTGTCAGATGGTTCAACT 47717 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || ||||||||||| || |||||||| || || ||||||||| Sbjct 47716 TCTAGGGTGATAGTTTTTCCAGTGAGAGTTTTGACGAAGATTTGCATT 47669 >seq1701 Length=66225 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| | ||| | ||||| |||| ||| |||||||| | ||||| ||||| Sbjct 18138 CCTCCACGTAATCTGAGGACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCGGAT 18197 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995 || || | || || |||||||||||||||||||| || | ||||||||| || Sbjct 18198 AAGGTTCTGTCATCTTCCAATTGTTTGCCGGCAAAGATAAGTCGCTGTTGGTC 18250 >seq1195 Length=97530 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| ||||| || |||||||| | ||| |||||| || | ||||| || || Sbjct 71657 CCTCCACGAAGTCTCAAGACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 71716 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||| ||||| || ||||| |||| ||||||||||||| || Sbjct 71717 AGGGTTCTACCATCTTCCAGGTGTTTACCAGCAAAGATCAGACGCTGTTGATCGGGAGGG 71776 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | ||||| | ||| ||||| || ||| || Sbjct 71777 ATGCCCTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGAAGGCTCCACC 71836 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || || || || || ||||| ||||| Sbjct 71837 TCCAAAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAAATCTGCAT 71883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380616689171304