Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaphorina_20citri_20[refseq_20GCF_5F000475195.1_202013-10-22] 161,988 sequences; 485,705,082 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3053 116 7e-21 seq686 109 1e-18 seq1195 95.1 2e-14 seq619 93.3 8e-14 seq288 89.7 9e-13 >seq3053 Length=52643 Score = 116 bits (128), Expect = 7e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| ||||| || ||||| | | || || |||||||| || ||||| || Sbjct 47825 ATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGGTCAGGAGGGATACCTTCCTT 47766 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || |||| ||||| ||| |||||| || || | ||||||||||| || || Sbjct 47765 GTCTTGGATCTTGGCTTTTACGTTTTCAATAGTGTCAGATGGTTCAACTTCTAGGGTGAT 47706 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||| || || || ||||| || || ||||||||| Sbjct 47705 AGTTTTTCCAGTGAGAGTTTTGACGAAGATTTGCATT 47669 Score = 107 bits (118), Expect = 3e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| ||||| || ||||| | | || || |||||||| || ||||| || Sbjct 12074 ATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGGTCAGGAGGGATACCTTCCTT 12015 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || | ||| | ||| |||||| || || | ||||||||||| || || Sbjct 12014 GTCTTGGATCTTAGCTTTCACGTTTTCAATAGTGTCAGAGGGTTCAACTTCTAGGGTGAT 11955 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || ||||| || |||||||||||| Sbjct 11954 GGTTTTTCCAGTGAGAGTTTTGACGAATATTTGCATT 11918 Score = 107 bits (118), Expect = 3e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| ||||| || ||||| | | || || |||||||| || ||||| || Sbjct 35734 ATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGGTCAGGAGGGATACCTTCCTT 35675 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || | ||| | ||| |||||| || || | ||||||||||| || || Sbjct 35674 GTCTTGGATCTTAGCTTTCACGTTTTCAATAGTGTCAGAGGGTTCAACTTCTAGGGTGAT 35615 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || ||||| || |||||||||||| Sbjct 35614 GGTTTTTCCAGTGAGAGTTTTGACGAATATTTGCATT 35578 Score = 104 bits (114), Expect = 4e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| ||||| || ||||| | | || || |||||||| || ||||| || Sbjct 47369 ATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGGTCAGGAGGGATACCTTCCTT 47310 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || |||| || | ||| |||||| || || | ||||||||||| || || Sbjct 47309 GTCTTGGATCTTGGCCTTCACGTTTTCAATAGTGTCAGAGGGTTCAACTTCTAGGGTGAT 47250 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || ||||| || || ||||||||| Sbjct 47249 GGTTTTTCCAGTGAGAGTTTTGACGAAGATTTGCATT 47213 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || ||||||| || || |||| || | |||| ||||| || || Sbjct 47221 ATTTGCATTCCTCCTCTCAGACGCAGGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTG 47162 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || | || || || || ||||| |||||||| | | || || Sbjct 47161 TAATCAGACAGGGTACGTCCGTCTTCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTGG 47102 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || ||||| || ||||| || |||| || | ||| ||||||||| Sbjct 47101 TCAGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCAATAGTATCACTG 47042 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||||||||||| || || |||||||| || | || || ||||| ||||||||| Sbjct 47041 GGTTCAACTTCTAGGGTGATGGTTTTACCGGTCAAAGTCTTCACAAAGATTTGCATT 46985 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || || ||||| || ||||| | | || || |||||||| || ||||| || Sbjct 52613 ATCTTCCAACTGCTTTCCAGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCTTCCTT 52554 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || || | || | ||| ||||||||| | ||||||||||| || || Sbjct 52553 ATCTTGGATCTTAGCCTTCACGTTTTCAATAGTATCACTGGGTTCAACTTCTAGGGTGAT 52494 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || | || || || || |||||||| Sbjct 52493 GGTTTTACCGGTCAAAGTCTTCACGAAGATTTGCAT 52458 >seq686 Length=151467 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||| ||||| || | ||||| ||| || || ||||| |||||||| || ||||| Sbjct 39220 AATATTGTAGTCTGACAGAGTTCTTCCATCTTCCAACTGTTTGCCGGCAAAGATCAATCT 39279 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||||||| ||||| || ||||| || || || ||||||| ||| | ||| || || Sbjct 39280 CTGTTGATCGGGAGGGATACCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATGGT 39339 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || | ||| || || || || || || || ||||| | ||||| ||||| || || Sbjct 39340 GTCACTGGGCTCGACCTCAAGGGTGATGGTCTTCCCTGTCAAAGTTTTGACAAAGATCTG 39399 Query 193358 CAT 193360 ||| Sbjct 39400 CAT 39402 >seq1195 Length=97530 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| ||| | || | ||| || || || ||||| || | |||||| | Sbjct 71897 CGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCTACCA 71956 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || ||||| || | | ||||||||||||||| ||||| || || Sbjct 71957 TCTTCCAGTTGTTTACCAGCAAAGATCAGACGCTGTTGATCAGGAGGGATTCCCTCCTTG 72016 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | ||| || || || |||| ||| || || | ||| || Sbjct 72017 TCTTGAATCTTGGCCTTGACGTTTTCGATGGTGTCTGAAGGCTCCACATCCAAAGTGATG 72076 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | ||||| || || || ||||| Sbjct 72077 GTCTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 72111 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || | |||||| ||| || | |||||| || || || || | | Sbjct 68646 ATGTTGTAGTCAGAGAGGGTTCTACCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGT 68705 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||||||||| ||||| || || ||||| || |||| || | ||| ||| || Sbjct 68706 TGTTGATCAGGAGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTG 68765 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| ||| || || | ||| || || || || || || || || || || || ||| Sbjct 68766 TCAGAAGGCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAAATCTGC 68825 Query 193359 AT 193360 || Sbjct 68826 AT 68827 >seq619 Length=161512 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || ||||| || ||||| | | || || |||||||| || ||||| || Sbjct 111566 TCTTCCAACTGCTTTCCAGCGAAAATGAGACGTTGCTGGTCAGGAGGGATACCTTCCTTG 111507 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| ||||| ||| |||||| || || | ||||||||||| || || Sbjct 111506 TCTTGGATCTTGGCTTTTACGTTTTCAATAGTGTCAGATGGTTCAACTTCTAGGGTGATG 111447 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAA 193351 ||||| || || || ||||| || || Sbjct 111446 GTTTTTCCAGTGAGAGTTTTGACGAA 111421 Score = 89.7 bits (98), Expect = 9e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || |||||||| || ||||| || ||||| || |||| ||||| |||| |||||| Sbjct 111761 TGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTTACATTTTCAATAGTG 111702 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||||||||||| || || ||||| || || | || || || || |||||| Sbjct 111701 TCAGATGGTTCAACTTCTAGGGTGATGGTTTTTCCAGTCAAAGTCTTCACGAAGATTTGC 111642 Query 193359 AT 193360 || Sbjct 111641 AT 111640 >seq288 Length=257319 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || | |||||| ||| || | |||||| || || || || | | Sbjct 247332 ATGTTGTAGTCAGAGAGGGTTCTACCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGT 247273 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||||||||| ||||| || || ||||| || |||| || | ||| || || Sbjct 247272 TGTTGATCAGGAGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCGATGGTG 247213 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||||| ||| || || | ||| || || || || || | ||||| || || || ||| Sbjct 247212 TCGGAAGGCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAAATCTGC 247153 Query 193359 AT 193360 || Sbjct 247152 AT 247151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897832734788160