Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaphorina_20citri_20[refseq_20GCF_5F000475195.1_202013-10-22] 161,988 sequences; 485,705,082 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq1728 120 7e-22 seq1337 120 7e-22 seq25611 87.8 4e-12 seq1112 87.8 4e-12 >seq1728 Length=64960 Score = 120 bits (132), Expect = 7e-22 Identities = 237/346 (68%), Gaps = 10/346 (3%) Strand=Plus/Plus Query 331976 AATTGCACGAGTTTCATCAATTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGT 332035 ||||| | |||||| || || ||||| |||| |||||| |||||| || Sbjct 3540 AATTGAAATAGTTTCCTCGATATCAGGCTCTTCTACTAAAATTTTTTGAAAACGGCGCTC 3599 Query 332036 TAATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTAC 332095 ||||| |||||| || |||| || ||||||||||| | ||| || || ||||| Sbjct 3600 AAATGCTGCATCTTTTTCTATATATTGACGATATTCATTAAGTGTGGTGGCCCCAATACA 3659 Query 332096 ACGAATCTCACCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCAT- 332154 | ||| || ||||| || | | |||| || |||||||| | || ||||| || | Sbjct 3660 ATGAAGTTCTCCACGAGATAATTCTGGTTTCAGCATATTACCAGCATCTATAGAGCCCTC 3719 Query 332155 TACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTT 332214 ||||| ||| | |||| |||| |||| | |||||| || |||| ||| ||| || Sbjct 3720 TACTT----TACCTGTTCCAATCATAGTATGTAATTCATCTATAAAAATTATAATATCTT 3775 Query 332215 CACGTTTCTT---TAGTTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGAT 332271 | || || || |||||||| | || | | ||| ||||||||||| ||||||| Sbjct 3776 TTTGATTATTAGATATTTCTTTTAATATTTTTTTTAAGCGATCTTCAAATTCTCCACGAT 3835 Query 332272 ACTTAGTACCAGC-AGTCAATGCACCAACATTTAGTGAAAGAATTT 332316 | || || ||||| ||| ||| | | | || |||| | | ||||| Sbjct 3836 ATTTTGTTCCAGCTAGT-AATAAAGCTATATCTAGTAATAAAATTT 3880 Score = 120 bits (132), Expect = 7e-22 Identities = 237/346 (68%), Gaps = 10/346 (3%) Strand=Plus/Plus Query 331976 AATTGCACGAGTTTCATCAATTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGT 332035 ||||| | |||||| || || ||||| |||| |||||| |||||| || Sbjct 10247 AATTGAAATAGTTTCCTCGATATCAGGCTCTTCTACTAAAATTTTTTGAAAACGGCGCTC 10306 Query 332036 TAATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTAC 332095 ||||| |||||| || |||| || ||||||||||| | ||| || || ||||| Sbjct 10307 AAATGCTGCATCTTTTTCTATATATTGACGATATTCATTAAGTGTGGTGGCCCCAATACA 10366 Query 332096 ACGAATCTCACCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCAT- 332154 | ||| || ||||| || | | |||| || |||||||| | || ||||| || | Sbjct 10367 ATGAAGTTCTCCACGAGATAATTCTGGTTTCAGCATATTACCAGCATCTATAGAGCCCTC 10426 Query 332155 TACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTT 332214 ||||| ||| | |||| |||| |||| | |||||| || |||| ||| ||| || Sbjct 10427 TACTT----TACCTGTTCCAATCATAGTATGTAATTCATCTATAAAAATTATAATATCTT 10482 Query 332215 CACGTTTCTT---TAGTTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGAT 332271 | || || || |||||||| | || | | ||| ||||||||||| ||||||| Sbjct 10483 TTTGATTATTAGATATTTCTTTTAATATTTTTTTTAAGCGATCTTCAAATTCTCCACGAT 10542 Query 332272 ACTTAGTACCAGC-AGTCAATGCACCAACATTTAGTGAAAGAATTT 332316 | || || ||||| ||| ||| | | | || |||| | | ||||| Sbjct 10543 ATTTTGTTCCAGCTAGT-AATAAAGCTATATCTAGTAATAAAATTT 10587 >seq1337 Length=71271 Score = 120 bits (132), Expect = 7e-22 Identities = 237/346 (68%), Gaps = 10/346 (3%) Strand=Plus/Plus Query 331976 AATTGCACGAGTTTCATCAATTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGT 332035 ||||| | |||||| || || ||||| |||| |||||| |||||| || Sbjct 69654 AATTGAAATAGTTTCCTCGATATCAGGCTCTTCTACTAAAATTTTTTGAAAACGGCGCTC 69713 Query 332036 TAATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTAC 332095 ||||| |||||| || |||| || ||||||||||| | ||| || || ||||| Sbjct 69714 AAATGCTGCATCTTTTTCTATATATTGACGATATTCATTAAGTGTGGTGGCCCCAATACA 69773 Query 332096 ACGAATCTCACCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCAT- 332154 | ||| || ||||| || | | |||| || |||||||| | || ||||| || | Sbjct 69774 ATGAAGTTCTCCACGAGATAATTCTGGTTTCAGCATATTACCAGCATCTATAGAGCCCTC 69833 Query 332155 TACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTT 332214 ||||| ||| | |||| |||| |||| | |||||| || |||| ||| ||| || Sbjct 69834 TACTT----TACCTGTTCCAATCATAGTATGTAATTCATCTATAAAAATTATAATATCTT 69889 Query 332215 CACGTTTCTT---TAGTTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGAT 332271 | || || || |||||||| | || | | ||| ||||||||||| ||||||| Sbjct 69890 TTTGATTATTAGATATTTCTTTTAATATTTTTTTTAAGCGATCTTCAAATTCTCCACGAT 69949 Query 332272 ACTTAGTACCAGC-AGTCAATGCACCAACATTTAGTGAAAGAATTT 332316 | || || ||||| ||| ||| | | | || |||| | | ||||| Sbjct 69950 ATTTTGTTCCAGCTAGT-AATAAAGCTATATCTAGTAATAAAATTT 69994 >seq25611 Length=761 Score = 87.8 bits (96), Expect = 4e-12 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 6140 TATAAATGTGGCAATCACCACCATTCCAAATAAATTCACCAACATCTAAACCCGTAATTT 6199 |||||||| |||||||| ||| |||| ||||| |||||||| | ||| || || | Sbjct 613 TATAAATGA--CAATCACCTCCAGTCCATATAAAATCACCAACCTTTAATCCTGTTTCGT 556 Query 6200 GTGCAATCATATGAGTTAGTAGTGAATAACTACTGATATTAAATGGAACTCCCAAAAATA 6259 |||| || |||||| ||| || ||||| | ||||||||||| | ||| ||||| | Sbjct 555 GTGCTATTATATGAATTAATAACGAATATGAAGCAATATTAAATGGTAATCCTAAAAAAA 496 Query 6260 GATCAGCGGATCTTTGATGTAGAATG-CAGCTTAGTTTCCCTTGTACTACACAAAATTGT 6318 ||| || | ||||| || | || || || ||| | | |||| ||||||| Sbjct 495 TATCCGCACTACGTTGATATA-ATTGACAAGATAATTTATTATTTGCTACGTAAAATTGA 437 Query 6319 ACAAAGCTATGACAAGGTGGCAACGTCATATCATCAAGCTCACCAACGTTCCATGC 6374 | || |||||||||| || || |||| | || || || ||| ||||| || Sbjct 436 AATAATATATGACAAGGAGGTAATTTCATTTTATGAATATCGGAAACATTCCAGGC 381 >seq1112 Length=102550 Score = 87.8 bits (96), Expect = 4e-12 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 6140 TATAAATGTGGCAATCACCACCATTCCAAATAAATTCACCAACATCTAAACCCGTAATTT 6199 |||||||| |||||||| ||| |||| ||||| |||||||| | ||| || || | Sbjct 24505 TATAAATGA--CAATCACCTCCAGTCCATATAAAATCACCAACCTTTAATCCTGTTTCGT 24562 Query 6200 GTGCAATCATATGAGTTAGTAGTGAATAACTACTGATATTAAATGGAACTCCCAAAAATA 6259 |||| || |||||| ||| || ||||| | ||||||||||| | ||| ||||| | Sbjct 24563 GTGCTATTATATGAATTAATAACGAATATGAAGCAATATTAAATGGTAATCCTAAAAAAA 24622 Query 6260 GATCAGCGGATCTTTGATGTAGAATG-CAGCTTAGTTTCCCTTGTACTACACAAAATTGT 6318 ||| || | ||||| || | || || || ||| | | |||| ||||||| Sbjct 24623 TATCCGCACTACGTTGATATA-ATTGACAAGATAATTTATTATTTGCTACGTAAAATTGA 24681 Query 6319 ACAAAGCTATGACAAGGTGGCAACGTCATATCATCAAGCTCACCAACGTTCCATGC 6374 | || |||||||||| || || |||| | || || || ||| ||||| || Sbjct 24682 AATAATATATGACAAGGAGGTAATTTCATTTTATGAATATCGGAAACATTCCAGGC 24737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1111518677027424