Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaphorina_20citri_20[refseq_20GCF_5F000475195.1_202013-10-22] 161,988 sequences; 485,705,082 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1649 125 8e-24 seq13586 116 4e-21 >seq1649 Length=69447 Score = 125 bits (138), Expect = 8e-24 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 |||||||| | ||| |||||||||||||||||| ||||||| | | |||||| Sbjct 16613 CTCAAGGACCTGTACAAGACGGTGTGGGAGATTCCGCAGAAGACAGTTCTGGACATGGCG 16672 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAG--AATC 55844 || ||| | || |||| ||| |||||||| ||||| || ||||||| ||||| | |||| Sbjct 16673 GCCGATAGGGGAGCGTTCATAGACCAGTCTCAGTCACTCAACATCTACATGGCGGAAATC 16732 Query 55845 CTTCACT-GGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACG 55903 ||| ||||| ||||||||||||| || |||| |||||| |||||||| ||| Sbjct 16733 ---AACTATGCCAAAATGAGCTCGATGCATTTCCACGGCTGGAAGCTAGGACTCAAAACG 16789 Query 55904 GGTATGTACTATCT 55917 ||| ||| |||| Sbjct 16790 GGTGGGTAAAATCT 16803 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 |||||||| | ||| ||||||||||||||||| ||||||| | | |||||| Sbjct 7997 CTCAAGGACCTGTACAAAACGGTGTGGGAGATTCCGCAGAAGACAGTTCTGGACATGGCG 8056 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || ||| | || |||| ||| |||||||| ||||| || ||||||| ||||| | | | Sbjct 8057 GCCGATAGGGGAGCGTTCATAGACCAGTCTCAGTCACTCAACATCTACATGGCGGA-AAT 8115 Query 55847 TCACT-GGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 ||| ||||| ||||||| ||||| || |||| |||||| |||||||| || || Sbjct 8116 AAACTACGCCAAAATGAGCTCAATGCATTTCCACGGCTGGAAGCTAGGACTCAAAACAGG 8175 Query 55906 TATGTACTATCT 55917 | ||| |||| Sbjct 8176 TGAGTAAAATCT 8187 Score = 104 bits (114), Expect = 3e-17 Identities = 168/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 ||||||||||| || ||||||||||||| ||||||| | || || |||||||| | Sbjct 2421 TTCGCCATCTATCTGGAGCCGTGGCACGGCGACATTTTCGACTTCCTCGAGCTCAAGAAG 2480 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGA 53688 || || | |||||| | ||| || |||||||| ||| || |||||||| ||||| Sbjct 2481 AACACCGGCAAGGAAGAGTTCCGCGCGCGGGACCTGTTCTACGGC-CTGTGGATACCGGA 2539 Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748 | |||||| | ||||||| || | ||||| ||||||||||| |||| || Sbjct 2540 CGAATTCATGAGACGCGTGGAGAGTGATGCTCAGTGGAGTCTGATGTGCCCCAACGCCTG 2599 Query 53749 CCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAG 53807 || ||||| || || || ||| ||||| | || ||||| || ||||| || Sbjct 2600 CCGAGGCCTGTCGGACTCCTGGGGAGAGAAGTTTGATGACCTGTATAAGAAGTACGAAG 2658 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 ||||||||||| || ||||||||||||| ||||||| | || || |||||||| | Sbjct 3644 TTCGCCATCTATCTGGAGCCGTGGCACGGCGACATTTTCGACTTCCTCGAGCTCAAGAAG 3703 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGA 53688 || || | |||||| | ||| || |||||||| ||| || |||||||| ||||| Sbjct 3704 AACACCGGCAAGGAAGAGTTCCGCGCGCGGGACCTGTTCTACGGC-CTGTGGATACCGGA 3762 Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748 | |||||| | ||||||| || | ||||| ||||||||||| ||| || Sbjct 3763 CGAATTCATGAGACGCGTGGAGAGTGATGCTCAGTGGAGTCTGATGTGCCCCAACACCTG 3822 Query 53749 CCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACG 53804 || ||||| || || || ||| ||||| | || ||||| || ||||| Sbjct 3823 CCGAGGCCTGTCGGACTCCTGGGGAGAGAAGTTTGATGACCTGTATAAGAAGTACG 3878 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541 ||||||| || || ||| | || ||||||||||| || || || || |||||| |||| | Sbjct 6583 TACGCAATTCTCTACTCATCGCTCCAATGCCAACGGCCTCCACTGCACAGATCCTGGGTA 6642 Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||| ||| | ||||| |||||||||| || |||||| Sbjct 6643 ACAATGAGTCCTTCGAACCGTACACGAGTAATATCTAC 6680 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541 ||||||| || || ||| | || ||||||||||| || || || || |||||| |||| | Sbjct 14879 TACGCAATTCTCTACTCATCGCTCCAATGCCAACGGCCTCCACTGCACAGATCCTGGGTA 14938 Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||| ||| | ||||| |||||||||| || |||||| Sbjct 14939 ACAATGAGTCCTTCGAACCGTACACGAGTAATATCTAC 14976 >seq13586 Length=1320 Score = 116 bits (128), Expect = 4e-21 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 |||||||| | ||| |||||||||||||||||| ||||||| | | |||||| Sbjct 611 CTCAAGGACCTGTACAAGACGGTGTGGGAGATTCCGCAGAAGACAGTTCTGGACATGGCG 670 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAG--AATC 55844 || ||| | || |||| ||| |||||||| ||||| || ||||||| ||||| | |||| Sbjct 671 GCCGATAGGGGAGCGTTCATAGACCAGTCTCAGTCACTCAACATCTACATGGCGGAAATC 730 Query 55845 CTTCACT-GGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACG 55903 ||| ||||| ||||||||||||| || | || |||||| |||||||| || Sbjct 731 ---AACTATGCCAAAATGAGCTCGATGCATTTCCATGGCTGGAAGCTAGGACTCAAAACA 787 Query 55904 GGTATGTACTATCT 55917 ||| ||| |||| Sbjct 788 GGTGGGTAAAATCT 801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546107969682400