Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dinoponera_20quadriceps_20[refseq_20GCF_5F001313825.1_202015-10-13] 14,123 sequences; 259,665,865 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq324 127 2e-24 seq3542 89.7 4e-13 >seq324 Length=2934362 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| ||||| ||| ||||||||||| ||||| ||||||| |||||| || | || Sbjct 1891950 GAGAACCAGATGCAGAGTCGACTCCTTTTGGATGTTGTAGTCCGACAGGGTGCGGCCATC 1891891 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 || |||||||| || ||| | || | ||||||||| || || | || |||||||| Sbjct 1891890 TTCGAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGATCTGGAGGGATCCCCTCCTTGTC 1891831 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||||||| ||| || | ||| ||||| || ||| |||| || ||||| Sbjct 1891830 TTGGATCTTTGCTTTGACATTCTCGATGGTATCGGAGGCCTCGACCTCCAATGTGATGGT 1891771 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||| || || || ||||| || ||||| Sbjct 1891770 CTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 1891738 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||||| |||||| ||||| || ||||| ||||| | | Sbjct 1892420 CCGCCACGAAGTCGGAGTACCAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 1892361 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || |||| || |||||||| || ||| | || | ||||||||| ||| ||| Sbjct 1892360 AGGGTGCGGCCGTCTTCGAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGATCCGGGGGG 1892301 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||| || | ||| || || || ||| Sbjct 1892300 ATCCCCTCCTTGTCCTGGATCTTCGCTTTGACATTCTCGATGGTGTCGGAGGCCTCGACC 1892241 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||||||||| || || || ||||| || ||||| Sbjct 1892240 TCCAATGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAAATCTGCAT 1892194 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20972 ATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG 21031 ||||||||| ||||| || |||||||| ||||| | |||||| | |||| |||||||| Sbjct 1892625 ATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTG 1892566 Query 21032 TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||| ||||| | || ||||| |||||||| || | ||||||||| || |||||| Sbjct 1892565 TTTCCCCGCGAAGATCAGTCTTTGCTGGTCGGGTGGAATGCCTTCCTTATCTTGGATCTT 1892506 Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 ||||| | | | ||| ||| | ||| |||| || ||||| ||||| || Sbjct 1892505 GGCCTTCACATTTTCAATAGTGTCAGAAGCCTCAACCTCCAAAGTGATGGTTTTGCCCGT 1892446 Query 21152 TAACGTTTTGACAAATATTTGCAT 21175 || || || ||||| || ||||| Sbjct 1892445 CAAAGTCTTCACAAAAATCTGCAT 1892422 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | |||||||| || | ||||||||||| || ||||| ||||| | Sbjct 1892876 CCGCCTCGAAGTCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAT 1892817 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | ||||||| |||||||| ||||| | || ||||| || ||||| || Sbjct 1892816 AAGGTACGCCCGTCCTCAAGCTGTTTCCCCGCGAAGATCAGTCTTTGTTGGTCGGGTGGG 1892757 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG-T 21127 | ||| || ||||| || || |||||| | ||| ||||| | ||| || Sbjct 1892756 ATGCCCTCTTTGTCTTGAATTTTGGCTTTCACGTTCTCGATGGTATC-CGACGCTTCGAC 1892698 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| || || || || || || |||||||| || ||||| Sbjct 1892697 CTCCAAAGTAATAGTTTTACCAGTCAAGGTCTTGACAAAAATCTGCAT 1892650 >seq3542 Length=209091 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | || |||| ||| | ||||| ||||| || ||||| ||||| | Sbjct 187237 CCTCCTCGAAGACGCAGAACCAAATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 187296 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| | | || |||| ||||||||| || |||| || | |||||| ||| || Sbjct 187297 AGAGTTCTGCCATCTTCCAACTGTTTGCCGGCGAAAATCAGACGCTGCTGATCCGGAGGA 187356 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| |||||| ||| || | | | || ||| | || | Sbjct 187357 ATTCCCTCTTTGTCTTGGATCTTGGCTTTTACATTTTCTATCGTGTCAGAAGCTTCGACT 187416 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||| |||||||| || | |||||||||||||| ||||| Sbjct 187417 TCGAGAGTAATAGTCTTGCCTGTGAGAGTTTTGACAAATATCTGCAT 187463 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | || |||| ||| | ||||| ||||| || ||||| ||||| | Sbjct 187009 CCTCCTCGAAGGCGCAGAACCAAATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 187068 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| | | || |||| ||||||||| || |||| || | |||||| ||| || Sbjct 187069 AGAGTTCTGCCATCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGATCCGGAGGA 187128 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| |||||| || || | | | || ||| | || | Sbjct 187129 ATTCCCTCTTTGTCTTGGATCTTGGCCTTTACATTTTCTATTGTGTCAGAAGCTTCGACT 187188 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || |||||||||||||| Sbjct 187189 TCGAGGGTGATGGTCTTGCCTGTGAGAGTCTTTACAAATATTTGCAT 187235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422186519031068