Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dinoponera_20quadriceps_20[refseq_20GCF_5F001313825.1_202015-10-13] 14,123 sequences; 259,665,865 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq324 98.7 8e-16 seq3542 95.1 9e-15 >seq324 Length=2934362 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| | |||| ||| | |||| ||||| || | ||||| || ||| Sbjct 1892420 CCGCCACGAAGTCGGAGTACCAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 1892361 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | ||||| || ||||| ||||||| ||| ||||| | || Sbjct 1892360 AGGGTGCGGCCGTCTTCGAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGATCCGGGGGG 1892301 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | ||||||| | | | |||||| |||||||| Sbjct 1892300 ATCCCCTCCTTGTCCTGGATCTTCGCTTTGACATTCTCGATGGTGTCGGAGGCCTCGACC 1892241 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| | ||| ||||||||||| ||||| Sbjct 1892240 TCCAATGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAAATCTGCAT 1892194 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || |||| || || ||||| | ||| ||| || || | ||||| |||||| Sbjct 1892648 CCGCCCCGGAGTCGCAAAACTAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCGGAC 1892589 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||| ||||| || || || |||| || || || |||| || Sbjct 1892588 AGGGTGCGTCCGTCTTCCAGCTGTTTCCCCGCGAAGATCAGTCTTTGCTGGTCGGGTGGA 1892529 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || | ||| ||||| |||||| || Sbjct 1892528 ATGCCTTCCTTATCTTGGATCTTGGCCTTCACATTTTCAATAGTGTCAGAAGCCTCAACC 1892469 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || | ||| ||||||||||| ||||| Sbjct 1892468 TCCAAAGTGATGGTTTTGCCCGTCAAAGTCTTCACAAAAATCTGCAT 1892422 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | || |||||||||||||| ||| |||| || | ||| ||||| ||||| Sbjct 1891700 TCCTTCTGGATGTTATAATCGGACAATGTGCGTCCGTCCTCGAGTTGCTTGCCAGCAAAG 1891641 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 || | ||||| || |||| || | |||||||| || ||| ||| | || || | Sbjct 1891640 ATGAGACGCTGCTGGTCGGGTGGGATCCCTTCTTTATC-CTGAATCTTGGCCTTCACGTT 1891582 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | |||||| || || || || | || || ||||| || || || || ||||| Sbjct 1891581 CTCGATAGTGTCGGACGCTTCAACTTCGAGGGTGATGGTTTTCCCCGTCAGTGTCTTCAC 1891522 Query 43098 AAAAATTTGCAT 43109 ||||| ||||| Sbjct 1891521 GAAAATCTGCAT 1891510 >seq3542 Length=209091 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42880 TCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCG 42939 ||||||||||| |||| || || ||||| | || |||||| || | |||||||| Sbjct 186778 TCGCCTCCACGAAGTCGCAAGACTAAATGCAGTGTTGACTCCTTCTGAATGTTGTAATCT 186837 Query 42940 GACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCC 42999 || | || | | || || | || |||||||| ||||||| ||||| ||||| | Sbjct 186838 GAAAGGGTTCTACCATCTTCTAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCCGGA 186897 Query 43000 GGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 || | || ||||| || ||| |||| || | | | ||||||| ||| ||| Sbjct 186898 GGAATTCCCTCTTTATCCTGGATTTTGGCTTTCACATTTTCTATTGTGTCGGAAGCTTCG 186957 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || || ||||| || || || || |||||||| |||||||| Sbjct 186958 ACTTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAAATATTTGCAT 187007 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | |||||||| | ||| ||||| || | ||||| ||||| Sbjct 187237 CCTCCTCGAAGACGCAGAACCAAATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 187296 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || ||||| ||||||||||| ||||||| ||||| ||||| | || Sbjct 187297 AGAGTTCTGCCATCTTCCAACTGTTTGCCGGCGAAAATCAGACGCTGCTGATCCGGAGGA 187356 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || |||| |||| || | | | ||||| ||| ||||| Sbjct 187357 ATTCCCTCTTTGTCTTGGATCTTGGCTTTTACATTTTCTATCGTGTCAGAAGCTTCGACT 187416 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || || || |||||||| ||||| || ||||| Sbjct 187417 TCGAGAGTAATAGTCTTGCCTGTGAGAGTTTTGACAAATATCTGCAT 187463 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| || || | | |||| ||| | ||| ||||| || | ||||| ||||| Sbjct 187464 GCCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCCTTCTGGATGTTGTAGTCGGA 187523 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | || ||||| ||||||||||| ||||||| ||||| ||||| | || Sbjct 187524 AAGAGTTCTGCCATCTTCCAACTGTTTGCCGGCGAAAATCAGACGCTGCTGATCCGGAGG 187583 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| |||| || | | | ||| || ||| ||||| Sbjct 187584 AATTCCCTCTTTGTCTTGGATCTTGGCTTTTACATTTTCTATTGTATCAGAAGCTTCGAC 187643 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || ||||| |||||||| |||||||| Sbjct 187644 CTCGAGAGTGATGGTCTTGCCTGTAAGAGTCTTCACAAAGATTTGCAT 187691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381303957115134