Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dinoponera_20quadriceps_20[refseq_20GCF_5F001313825.1_202015-10-13] 14,123 sequences; 259,665,865 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3542 98.7 8e-16 seq408 93.3 4e-14 seq1673 89.7 4e-13 seq324 84.2 2e-11 >seq3542 Length=209091 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || |||||||| ||||| |||||| |||||||||||||| | | || | || Sbjct 186796 AAGACTAAATGCAGTGTTGACTCCTTCTGAATGTTGTAATCTGAAAGGGTTCTACCATCT 186855 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| ||| || |||| | ||||||||||||| || | | || || ||| Sbjct 186856 TCTAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCCGGAGGAATTCCCTCTTTATCC 186915 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCT-CGACTGTTATGGT 48693 ||||| || | | |||| || |||| || || || || ||| || ||||| Sbjct 186916 TGGATTTTGGCTTTCACATTTTCTATTGTGTCGGAAG-CTTCGACTTCGAGGGTGATGGT 186974 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||| ||||| || |||||||| || ||||| Sbjct 186975 TTTACCCGTGAGGGTCTTCACAAATATTTGCAT 187007 >seq408 Length=1748099 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||||||||| || || || | ||| || ||||||||| |||||| || | | | Sbjct 1304020 CCTTTTGAATATTATAGTCGGACAAAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGA 1304079 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 ||| ||||||||||| ||| | | |||||||||| || || ||| | | Sbjct 1304080 TTAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTTACATTTT 1304139 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | || || |||| | |||| ||| | || || |||||||| ||||| |||||||| | Sbjct 1304140 CGATTGTGTCGGATGCCTCCACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTCACGA 1304199 Query 48717 AAATCTGCATCGTG 48730 |||||||||| ||| Sbjct 1304200 AAATCTGCATGGTG 1304213 >seq1673 Length=623036 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/139 (75%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 52451 AATTGGCAGCGGCTGGATTTTATTACACAGGCCATTCAGATCAAGTGAATTGCTTTTATT 52510 |||||||| | |||||||||||||| ||||| || |||||| |||| ||||| Sbjct 1456 AATTGGCAACTGCTGGATTTTATTATACAGGAAATGGTGATCAAACATTATGCTATTATT 1397 Query 52511 GCGGAGGGGGTTTAAGAGATTGGAAGACTGGAGACGATCCTTGGCAACAGCACGCGCGCT 52570 ||||||| || || | ||||||| || | | || ||||||||| ||||||| || | Sbjct 1396 GCGGAGGCGGATTGAAAGATTGGGAGCCAGAGGATGATCCTTGGGAACAGCATGCCAAAT 1337 Query 52571 GGTTTGATAAGTGTCTGTT 52589 ||||| ||| ||| |||| Sbjct 1336 GGTTTTCTAAATGT-TGTT 1319 >seq324 Length=2934362 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| ||||| || |||||||| |||| || || |||| || ||||| Sbjct 1892397 ATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCGAGCTG 1892338 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 || || | | || || | |||||||||| || | | ||||||||| || || Sbjct 1892337 TTTCCCAGCAAAGATCAATCTCTGCTGATCCGGGGGGATCCCCTCCTTGTCCTGGATCTT 1892278 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | |||| | | | ||||| |||| | ||| ||| | ||| ||||| || ||||| Sbjct 1892277 CGCTTTGACATTCTCGATGGTGTCGGAGGCCTCGACCTCCAATGTGATGGTCTTGCCGGT 1892218 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | ||| ||||||||||||||||| Sbjct 1892217 CAAAGTCTTCACAAAAATCTGCAT 1892194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421178692532123