Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dinoponera_20quadriceps_20[refseq_20GCF_5F001313825.1_202015-10-13] 14,123 sequences; 259,665,865 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1328 125 4e-24 seq2581 123 1e-23 seq2366 116 2e-21 seq1366 111 8e-20 >seq1328 Length=3537139 Score = 125 bits (138), Expect = 4e-24 Identities = 94/109 (86%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 11428 GAAATATA--GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 |||||| | |||||| |||||| || |||||||||| |||||||||| |||||| Sbjct 3261776 GAAATAAAATGAATTAGAAAAAAAAAAACATGGCCCATGAGGGGATCGAACCCGCGACCT 3261717 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC-GTCG 11533 ||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 3261716 TCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCTGTCG 3261668 >seq2581 Length=779380 Score = 123 bits (136), Expect = 1e-23 Identities = 81/90 (90%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 450617 AAAAAAAAAAACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 450558 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||||| |||||||||||||||||||| ||| Sbjct 450557 GCTCTAACCAACTGAGCTAATGGGCCATCG 450528 Score = 122 bits (134), Expect = 5e-23 Identities = 80/88 (91%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| |||| ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 451214 AAAAAAAGAAAT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 451156 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| |||||||||||||||||||||| Sbjct 451155 GCTCTAACCAACTGAGCTAATGGGCCGT 451128 Score = 116 bits (128), Expect = 2e-21 Identities = 79/88 (90%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 451563 AAAAATAAACCTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 451504 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| ||||||||||||||| |||||| Sbjct 451503 GCTCTAACCAACTGAGCTAATAGGCCGT 451476 >seq2366 Length=2014639 Score = 116 bits (128), Expect = 2e-21 Identities = 88/104 (85%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| || ||| || ||||| | | |||||||||| |||||||||| ||||||||| Sbjct 10369 AAAAATTGAACAAAAAAAAAGT---ACTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 10313 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||||||||||||| |||||||||||||||||||| || Sbjct 10312 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCTTC 10269 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||||| | ||||||||||| |||||||||| |||||||||||||||||||| Sbjct 579249 AAAAAAAAATTAGCGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 579308 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 579309 CGACGCTCTAACCAACTGAGCTAATGGGCC 579338 >seq1366 Length=3285867 Score = 111 bits (122), Expect = 8e-20 Identities = 73/80 (91%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 3277622 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 3277681 Query 11515 CTGAGCTAATGGGCC-GTCG 11533 |||||||||| |||| |||| Sbjct 3277682 CTGAGCTAATAGGCCAGTCG 3277701 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261446191072348