Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dinoponera_20quadriceps_20[refseq_20GCF_5F001313825.1_202015-10-13] 14,123 sequences; 259,665,865 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq1850 109 1e-20 >seq1850 Length=5804718 Score = 109 bits (120), Expect = 1e-20 Identities = 236/347 (68%), Gaps = 11/347 (3%) Strand=Plus/Plus Query 3160 CTGCACGCGCAAAACTCTTACGCCTACAAATACTTTGGCTGCGAGCTGCTAAACTTTGTC 3219 |||||| ||| |||| ||||||||| | ||| ||||||| |||| ||||| || Sbjct 5046525 CTGCACATGCAGAACTTCTACGCCTACCGTTTCTTCCTCTGCGAGGTGCTCAACTTCATC 5046584 Query 3220 AACGTTGTCGCACAGATATGCTTCATGAATGCCTTTATAGGCGAAGACTTTTTGTTGTAC 3279 ||||| ||| ||||| | ||||||| || ||| ||| || || || ||| Sbjct 5046585 AACGTGTTCGGCCAGATCTACTTCATGGATTTCTTCTTAGACGGCGAGTTCACCACCTAC 5046644 Query 3280 GGAATCTATGTTACCTTCTTCAACCAGGAAGCCGCCC-ATCCGAACATGACGAACCCCAT 3338 || | | || | |||| | || | | |||| | | ||| ||| ||| || Sbjct 5046645 GGCTCCGACGTGGTCCGGTTCACCGAG-ATGGAGCCCGAGGAGCGCAT--CGA-CCCGAT 5046700 Query 3339 G---AAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGG 3395 | ||| || || || | | |||| || || || |||||||||||||| || || Sbjct 5046701 GTCCAAG---GTGTTCCCGAAAGTCACCAAGTGCACATTCCACAAATACGGTCCGTCTGG 5046757 Query 3396 CTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGAT 3455 ||| || | || | ||| || |||||| | || ||| ||| | |||||||||||||| Sbjct 5046758 CTCGGTGCAGAAGTTCGACGGGCTCTGCGTGCTGCCGCTCAACATCGTCAACGAGAAGAT 5046817 Query 3456 CTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATCATCAGCG 3502 |||| | |||||||||||||||||| | | || || ||| | |||| Sbjct 5046818 CTACGTCTTCCTCTGGTTCTGGTTCATCATTCTGGCGATCCTGAGCG 5046864 Score = 84.2 bits (92), Expect = 5e-13 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 ||||| |||||||| |||||||| |||||||| | | | | |||| |||||| | Sbjct 5083068 ATGTATCTTTCACAAGTACGGTCCGTCGGGCTCGATTCAGACCCACGACTCCCTCTGCCT 5083127 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCT 3481 || ||| |||||| |||||||||| |||||| ||| |||||||||||| || Sbjct 5083128 ACTACCGCTCAACGTGTTCAACGAGAAAGCCTACATCTTCTTCTGGTTCTGGTACT 5083183 Score = 77.0 bits (84), Expect = 8e-11 Identities = 93/127 (73%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 2675 CCGTGAAGGGCTTAATAAAGCTTCCAACAGTCTCCATCGACAATGTATTCTTCCGGTTGC 2734 |||||||||| | | ||||| | || | ||||||||| | |||||| ||| Sbjct 5046040 CCGTGAAGGGGCTGCTGAAGCTCGACTCGGTGTGCATCGACAACAATGTGTTCCGGCTGC 5046099 Query 2735 ATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCATTGCTGGTGACTTCGCGGCAGT 2794 | ||| || ||||||||||| || | ||||| || ||||||||||| || ||||||| Sbjct 5046100 ACTACAAGGCCACCGTGATCACGCTGGTGGCGTTCTCCTTGCTGGTGACCTCACGGCAGT 5046159 Query 2795 ACTTCGG 2801 || |||| Sbjct 5046160 ACATCGG 5046166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12478072210500