Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dinoponera_20quadriceps_20[refseq_20GCF_5F001313825.1_202015-10-13] 14,123 sequences; 259,665,865 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1491 152 4e-31 seq4116 100 2e-15 >seq1491 Length=3611237 Score = 152 bits (168), Expect = 4e-31 Identities = 677/1052 (64%), Gaps = 24/1052 (2%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 |||||||||||||| | ||| || || |||||||| || || || ||||| | ||||| Sbjct 3014533 ATACCATTGGCATCGATATCGAAGGTAACTTCAATCTGTGGTACGCCTCTGGGCCCAGGT 3014474 Query 281501 GGGAT-CCCTTCCAAATTA-AATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 281558 || || ||| | || || ||| | || ||| | |||||||||||||| | || | Sbjct 3014473 GGAATTCCCGT--AAGTTCGAATTTGCCAAGAATGTTATTATCTTTAGTCATCGCTCTCT 3014416 Query 281559 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 281618 | || || ||| ||| ||| ||| | | |||||| || || || || |||||| | Sbjct 3014415 CTCCTTCATAAACTTGAATAAGTACTCCCGGTTGATTGTCCGAGTACGTAGTAAATGTTT 3014356 Query 281619 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678 | | || ||| || || || || || | || | | ||||||| | ||| |||| Sbjct 3014355 GAGTCTGCTTCGTAGGTATCGTGGTATTCCTCTTGATCAAAGTGGTCATGACACCGCCAG 3014296 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738 | || || | ||| || || | ||||| || || | ||| | | || ||| | || | Sbjct 3014295 CGGTCTCGATACCCAGTGACAATGGAGTCACGTCCAATAGAAGCAGATCTTGCACTTCCT 3014236 Query 281739 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798 | | | || || || || ||||||| || || || || || || || |||| Sbjct 3014235 CGGACTTGTCGCCGTGCAGGATGGCCGCTTGAACCGCTGCGCCGTAAGCGACGGCCTCAT 3014176 Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-T 281857 | ||||| | || | || | | || || ||||| || | | || || | ||| Sbjct 3014175 CCGGATTGATAGACTTGTTCAACTCCTTGCCGTTGAAGAAGTCTTGTAGCAGCT-TCTGA 3014117 Query 281858 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 281917 | ||| || || | | || || || |||| || || || ||||| | || ||| Sbjct 3014116 ATCTTTGGTATCCTCGTGGACCCACCGACTAGGACTATGCTGTGAACCTGAGCCTTGTCC 3014057 Query 281918 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT-CTAAACAAGTCTGA 281976 | || | ||| || | || || ||||| |||||| ||| || |||| || | Sbjct 3014056 ATCTTCGCGTCCCTCAATGCCTTCTCCACGGGCTCAAGA-GTGCTCCTGAACAGATCGGC 3013998 Query 281977 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 282034 || ||||| ||||| | || || || || ||| | || || || || || ||||| Sbjct 3013997 GCAGAGTTCCTCGAACCTGGCCCTGGT--GATCGACGTGTAGAAGTCGATGCCCTCGAAT 3013940 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 | || |||| ||||| | | ||| ||||| || | | | || || | || Sbjct 3013939 AGCGAGTCAATCTCAATGCTCGCTTGTGTCGATGAGCTCAACGTTCTCTTCGCTCTCTCG 3013880 Query 282095 CATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTGCTGATTGATTCAAATCTGTTTTATATT 282152 || || ||||| || | || | || || ||| || | | || ||| | || || | Sbjct 3013879 CAAGCGGTCCTCAGACGTCTCAGAGCCCTCTTGTTGGT--ACCCAGATCCTTCTTGTACT 3013822 Query 282153 TTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTCC 282210 | |||||||| || | ||| | ||| | || | ||||| || || || || || || Sbjct 3013821 TCCTCTTGAACTCCTGAACGAA--ATGGTTGACCATTCGATTGTCGAAGTCCTCGCCACC 3013764 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270 | | ||| | || | || | | | || | ||| | || || || | | ||| | Sbjct 3013763 AAGATGAGTGTCGCCGGCTGTGGATTTCACCTCGAAGATGCCGTCCTCGATCGTCAAGAT 3013704 Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 282330 | || || ||| || ||||||| ||| || || || |||||| |||| | Sbjct 3013703 CGACACGTCGAAGGTACCGCCACCCAGATCGAAGATCAGCACATTC--TTCTCGCCCAAA 3013646 Query 282331 G--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 | || ||||| ||||| ||||| | ||||| || || || || || || || || | | Sbjct 3013645 GCTTTCTTATCGAGACCGTACGCTATCGCAGCCGCCGTGGGCTCGTTTATTATCCTGAGA 3013586 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 || || |||||||| || || || || || || ||||| || || || || || || Sbjct 3013585 ACGTTCAGACCAGCGATAGCGCCGGCGTCCTTTGTCGCTTGCCTCTGCGAGTCATTGAAG 3013526 Query 282449 TATGCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || || |||||||||||||| | ||||| Sbjct 3013525 TAAGCCGGTACAGTAATAACGGCGTTCGTTAC 3013494 >seq4116 Length=2211964 Score = 100 bits (110), Expect = 2e-15 Identities = 132/181 (73%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 282296 ATATCAAAA-ATAAGTACATTCATTTCTT--TGTCTTGGTTTTTATCAAGACCATACGCA 282352 ||||||| | ||||||||||| || | | | |||| | |||||| | || || ||| Sbjct 1312529 ATATCAATACATAAGTACATTTCTTACATCTTATCTTCCTGTTTATCCATGCCGTATGCA 1312588 Query 282353 AAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCT 282412 | ||||| || || || |||||||| | | | || || | ||||| ||| || Sbjct 1312589 AGTGCAGCTGCTGTCGGCTCATTAATTACACGAAGTACGTTTAATCCAGCTATTTGACCA 1312648 Query 282413 GCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA 282472 |||||||| |||||||||| ||||||||||| ||||| || || ||||| | ||| ||| Sbjct 1312649 GCATCTTTTGTGGCTTGTCGCTGTGAATCGTTGAAATACGCCGGTACAGTGACAACAGCA 1312708 Query 282473 T 282473 | Sbjct 1312709 T 1312709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739937020383798