Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dinoponera_20quadriceps_20[refseq_20GCF_5F001313825.1_202015-10-13] 14,123 sequences; 259,665,865 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq324 91.5 1e-13 seq3542 86.0 4e-12 >seq324 Length=2934362 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || |||||| ||||||| || || || |||||| | || Sbjct 1892971 GACAAAGAAGGCATTCCACCTGACCAGCAAAGGTTAATCTTCGCGGGCAAACAACTCGAG 1893030 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGA 27980 |||| |||| ||||||||||||||||||||| ||||| Sbjct 1893031 GACGGGCGCACCTTGTCCGATTACAACATCCAGAAAGA 1893068 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || ||||| |||| || |||||| | | || || || || ||||| |||| Sbjct 1892515 GATAAGGAAGGCATTCCACCCGACCAGCAAAGACTGATCTTCGCGGGGAAACAGCTGGAA 1892574 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | ||||||| |||||||| || |||||| ||||||||||| |||||| Sbjct 1892575 GACGGACGCACCCTGTCCGACTACAACATTCAGAAAGAGTCTACTTTGCATTTAGTTTTG 1892634 Query 28003 CGTTTGCGTGGCGG 28016 || | || ||||| Sbjct 1892635 CGACTCCGGGGCGG 1892648 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| ||| | || || || || ||| | || ||||| | || Sbjct 1891738 ATGCAGATCTTTGTGAAGACTTTGACCGGCAAGACCATCACATTGGAGGTCGAGGCCTCC 1891797 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| ||| || ||||| || || | || || | Sbjct 1891798 GATACCATCGAGAAT--GTCAAAGCAAAGATCCAAGACAAGGAGGGGATCCCTCCAGATC 1891855 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || ||||| || ||||| | || || | |||| | |||| || |||| Sbjct 1891856 AGCAGAGATTGATCTTTGCTGGGAAACAGCTCGAAGATGGCCGCACCCTGTCGGACTACA 1891915 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| ||| ||| ||||| ||||| | ||||| ||||| ||| Sbjct 1891916 ACATCCAAAAGGAGTCGACTCTGCATCTGGTTCTCCGTTTACGTGGTGGC 1891965 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || |||||| |||| || || || || ||||| | || Sbjct 1892059 GACAAAGAAGGCATTCCACCTGACCAGCAAAGGTTGATCTTCGCAGGCAAACAGCTCGAG 1892118 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGA 27980 |||| ||||| |||||||||||||||||||| ||||| Sbjct 1892119 GACGGACGCACATTGTCCGATTACAACATCCAGAAAGA 1892156 >seq3542 Length=209091 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||||| || || || |||||| | || |||||| | Sbjct 187463 ATGCAGATATTTGTCAAAACTCTCACAGGCAAGACTATTACTCTCGAAGTCGAAGCTTCT 187404 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| || ||| || || |||||||| || |||| ||| | Sbjct 187403 GACACGATAGAAAAT--GTAAAAGCCAAGATCCAAGACAAAGAGGGAATTCCTCCGGATC 187346 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATT 27964 |||| || | ||||| ||||| ||||| ||||| || | |||| || | ||||| | Sbjct 187345 AGCAGCGTCTGATTTTCGCCGGCAAACAGTTGGAAGATG---GCAGAACTCTTTCCGACT 187289 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || || ||| | ||||||||| ||||| | || || || Sbjct 187288 ACAACATCCAGAAGGAATCCACACTTCATTTGGTTCTGCGTCTTCGAGGAGG 187237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355801147518021