Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq197 100 6e-16 seq43 100 6e-16 seq99 89.7 1e-12 seq1229 86.0 1e-11 >seq197 Length=498763 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||||||| Sbjct 378431 TGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 378490 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 378491 CCCCACGTTGGGC 378503 >seq43 Length=940384 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||||||| Sbjct 151151 TGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 151210 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 151211 CCCCACGTTGGGC 151223 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 162338 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 162279 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 162278 CCCACGTTGGGC 162267 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 212354 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 212413 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 212414 CCCACGTTGGGC 212425 >seq99 Length=721321 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 165706 GCTTG-CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||||| |||| |||| |||||||||||||| | ||||| ||||||| | ||||||||||| Sbjct 488447 GCTTGGCCCGGCTAGGTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 488506 Query 165765 CGAGCCCCACGATGGG 165780 ||| ||||||| |||| Sbjct 488507 CGAACCCCACGTTGGG 488522 >seq1229 Length=45773 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| | ||||||||||||||||||| | ||||| ||||| | | ||||||| |||||||| Sbjct 32656 GCCTGGCTAGCTCAGTCGGTAGAGCACAAGACTCTTAATATCGGGGTCGTGAGTTCGAGC 32597 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 32596 CCCACGTTGGGC 32585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057747599653310