Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq476 122 1e-22 seq2933 102 1e-16 seq992 102 1e-16 seq74 89.7 6e-13 >seq476 Length=239761 Score = 122 bits (134), Expect = 1e-22 Identities = 170/237 (72%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 24401 AACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTG 24460 || |||||||||||| || | ||||||||||| ||||| || || || || ||||| Sbjct 225775 AATATATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTG 225716 Query 24461 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAA 24520 ||||| || |||||||||||||| || | || |||||| | |||||||||| | | Sbjct 225715 GAATCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTCAACAAG 225656 Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 ||||||||| || || || || || |||||||| || ||||| || || ||||| Sbjct 225655 ATTTTCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATACAAAATG 225596 Query 24581 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATA-TCCACTT 24636 ||| || || | | || ||||||||| | ||| | | | | | ||||||| Sbjct 225595 ACGTTCATCATCAGTCAATCTAATCCAATCATCAAGATCCTAAAAAAAAGTCCACTT 225539 Score = 122 bits (134), Expect = 1e-22 Identities = 163/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || |||||| ||| | || ||| ||| || | ||| ||||||| || | || || Sbjct 226099 TCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCTTC 226040 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 | |||||||| | ||||| |||||| || || || ||||| || || ||||| ||| Sbjct 226039 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATGCA 225980 Query 24279 ATAAGTCTTTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 24335 | | ||||| ||| || || ||| ||| |||||| || |||||||||| ||| Sbjct 225979 ACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTGCC 225920 Query 24336 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 24381 |||||||||||||| ||||| || || || |||||||| | | ||| Sbjct 225919 TTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAAAAAGT 225874 >seq2933 Length=10010 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 53195 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 53254 ||||| ||||| | ||| |||||||| || | ||||||||| ||||| ||||| ||||| Sbjct 839 GTATAGGGTTCTATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATG 898 Query 53255 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 53314 ||||| | ||| || |||||||| ||||| | | ||||| ||||||| |||| Sbjct 899 GGTGCTAACAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTAATATTTCC 958 Query 53315 CAATTCCAAAGATC 53328 |||||||| | ||| Sbjct 959 CAATTCCATAAATC 972 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 ||||||| | ||||| |||||||| |||||||| || || || | ||||| |||||| Sbjct 1615 TATTGTACAACTTCAGTACAAAGATTGCTACACTTAATTGTACCAAGATTTTTTTGATTG 1674 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 || || ||||| ||||| ||||| | || | ||| ||||||||||||| || || Sbjct 1675 CTTTTAGCATTACATGCATCTTTATACAACATATACGGCATACCAGTTTCAATTTGAGA 1733 >seq992 Length=79738 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 ||||| | |||||||| | || ||||||||||||||| || ||||| ||||| ||| Sbjct 42893 TATGTTTTATATGGTCCATATTTAGTAGCTAGTTCACAACTTGCTTCTAAAGCACCATAA 42952 Query 53450 TAAATGGTTTCGAAGATCTTCT-TATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 53508 ||||||||||| | || || | | || |||||| ||||| ||||||| ||||| Sbjct 42953 TAAATGGTTTC-ATGAATTTGTATGTTAAGATCTCTAGCTTCTTTAGTATCAAAAGGATA 43011 Query 53509 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 53558 || | |||||| |||||||||||||| | |||||| || |||| Sbjct 43012 TTTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAATAG 43061 >seq74 Length=781666 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 || || || || ||||| ||||||||||||||||| || || || | ||||| ||||| Sbjct 484407 TACTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTCTGATTG 484348 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 || || ||||| ||||| ||||| || | ||||| ||||||||||||| || || Sbjct 484347 CTTTTGGCATTACAGGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 484289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593679764891760