Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq208 163 4e-35 seq166 131 3e-25 seq308 91.5 2e-13 seq306 91.5 2e-13 >seq208 Length=490746 Score = 163 bits (180), Expect = 4e-35 Identities = 202/281 (72%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 202778 CATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTA 202837 ||||||||||| ||||||| |||||||| ||||| ||| ||||||| ||||| | | Sbjct 174522 CATCCTTCATAGTTCATATACCTAATTTTTCCAAAAATTTCTCTTTCTCTCCATCCCTGA 174581 Query 202838 TCATGAATACCACAAATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCT 202897 |||||||| ||||| |||||||||||||| |||||| | ||| | || ||||| ||||| Sbjct 174582 TCATGAATGCCACATATTGACCACATACACCCAACAAAACCACTAGGGTCACGACCATCC 174641 Query 202898 ATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTC 202957 || |||||| ||||| | || | |||| ||||| | | ||| Sbjct 174642 ATGCTATATTTGTCATTGAGATAAATTGCATCAGCTAGTGCTCTATCTGGAGTATCAGTC 174701 Query 202958 CATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATA 203017 ||||||| ||| ||||| ||||| ||||| | || | |||||||| || || | | Sbjct 174702 CATTCTAGTATCTTTTTTGCCCAGTACATGCGTAGGAAACCATGCATCTTGCCTTCCTTT 174761 Query 203018 ATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGT 203058 | || ||| |||||| | |||||| | || |||||| || Sbjct 174762 ACCAACTGTATTTGTGCAGAATTCCAAAGATCGTCATGTGT 174802 Score = 109 bits (120), Expect = 8e-19 Identities = 109/140 (78%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 203527 ATGTTTAATAATAGGTATAAATTCAGTTAAATATTCTGATAATTTATAATTTATTTTATT 203586 |||||| ||||| ||| |||||| |||||| | || | |||||| | || ||||| || Sbjct 175484 ATGTTTGATAATTGGTGGAAATTCTGTTAAAAACTCGGGTAATTTGTTGTTGATTTTGTT 175543 Query 203587 TCTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGCAATCCAACATGGTACAATATT 203646 || || ||| |||||||||||||| ||| | | || | |||||| ||||||||||| Sbjct 175544 TCGTATTGTTCTTGCAGAATATTCTTGTTTGTCAGAGGCTACCCAACAAGGTACAATATT 175603 Query 203647 ATGTGAATCAACTTG-ATAA 203665 ||| |||||||| || |||| Sbjct 175604 ATGGGAATCAACCTGTATAA 175623 >seq166 Length=548810 Score = 131 bits (144), Expect = 3e-25 Identities = 232/338 (69%), Gaps = 3/338 (1%) Strand=Plus/Plus Query 205449 ATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACC 205508 ||| || ||||| || || | ||| |||||| |||| ||| || ||||| |||| ||| Sbjct 535461 ATGGGCTATCATGTATGTAAGTAATGAATAACTGGCAATATTGAAGGGTACCCCTAGACC 535520 Query 205509 CATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAA 205568 ||| ||||| |||| ||| ||||||||||| | | ||| || ||| ||| Sbjct 535521 CATGTCAGCCGATCGTTGGTACATTTGACAGGACAAATA---CCCATCGGCGACAAAAAA 535577 Query 205569 TTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGC 205628 ||||| | ||||||||| ||||||| |||| || ||||| |||||||| || Sbjct 535578 CTGTACCAGACAATGACATGGTGGTAAGGCCATTTTAGGTACATCGCATGGATTCCATGC 535637 Query 205629 TGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAA 205688 | | | || || ||||| ||| |||| ||| |||| || | | | | Sbjct 535638 AATCATAAGCATTCGCCTGTCATCAGGGTTAGTTTTGATTGTATTGATGACGTTTTGAAG 535697 Query 205689 TTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATG 205748 |||||||| |||| || |||| ||| | | ||| | ||| | |||||| |||| Sbjct 535698 TTGATCAATGCCTTTCCCTGAGTAATCTGTGTGTACATCTACATACTCAGCACCGTAATG 535757 Query 205749 ACGCCATTGAAAACCATAAACTGGACCTAAATCACCTT 205786 ||||||||||| |||||||| || || || ||||||| Sbjct 535758 TCGCCATTGAAATCCATAAACGGGTCCCAAGTCACCTT 535795 >seq308 Length=372676 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || ||||| || || || ||| | ||| |||| | Sbjct 102552 ATGCAAATTTTTGTGAAGACCCTTACAGGGAAGACCATCACTCTCGAGGTTGAGTCTTCC 102611 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||| ||||||||||||||||| || || |||||| Sbjct 102612 GACACTATTGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCGCCAGATCAA 102671 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || || || | || || | || ||||| |||||||| Sbjct 102672 CAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGACGTACATTGTCGGATTATAAC 102731 Query 124719 ATTCAAAA 124726 || ||||| Sbjct 102732 ATCCAAAA 102739 >seq306 Length=365715 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 ||| || || || ||||||||| | ||||||||||| || || ||||| || ||| |||| Sbjct 85449 AGGCATTCCCCCGGATCAACAACGTCTTATTTTTGCTGGCAAGCAATTGGAAGATGGTCG 85390 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 ||| | || || ||||| |||||||| || || | || || || | |||||| | Sbjct 85389 CACACTCTCTGACTACAATATACAAAAAGAGTCTACACTTCACTTAGTACTTCGTTTAAG 85330 Query 124760 AGGTGGTATTAAAAA 124774 ||||||| |||||| Sbjct 85329 AGGTGGTGCTAAAAA 85315 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || ||||| |||||| | ||| |||| || Sbjct 86798 ATGCAAATTTTTGTTAAAACCCTTACGGGTAAAACAATAACTCTTGAGGTTGAGTCATCA 86739 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATAC 124647 ||| ||||| ||| ||||| ||||||||||||||||||||||| || Sbjct 86738 GATTCAATTGAAAATGTAAAATCGAAAATTCAAGATAAAGAAGGTAAAC 86690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755402768681600