Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2424 114 1e-20 seq284 114 1e-20 seq265 113 5e-20 seq210 111 2e-19 seq230 109 6e-19 seq89 109 6e-19 seq708 104 3e-17 seq932 98.7 1e-15 seq622 93.3 5e-14 seq466 91.5 2e-13 seq1061 84.2 3e-11 >seq2424 Length=14082 Score = 114 bits (126), Expect = 1e-20 Identities = 77/85 (91%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 7289 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 7230 Query 60115 ACTCACCACTATACTACCGAGGATT 60139 ||| ||||||||||||||||||||| Sbjct 7229 ACTTACCACTATACTACCGAGGATT 7205 >seq284 Length=402928 Score = 114 bits (126), Expect = 1e-20 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 378818 TTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 378877 Query 60123 CTATACTACCGAGGATTG 60140 |||||||||||||||||| Sbjct 378878 CTATACTACCGAGGATTG 378895 Score = 113 bits (124), Expect = 5e-20 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 347506 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 347447 Query 60115 ACTCACCACTATACTACCGAGGATTG 60140 ||| ||||||||||||||||||| || Sbjct 347446 ACTTACCACTATACTACCGAGGACTG 347421 >seq265 Length=408381 Score = 113 bits (124), Expect = 5e-20 Identities = 75/82 (91%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 167301 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 167242 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 167241 CTTACCACTATACTACCGAGGA 167220 >seq210 Length=519240 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||| || || ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 439699 AAAAWTTYTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 439758 Query 60116 CTCACCACTATACTACCGAGGATT 60139 || ||||||||||||||||||||| Sbjct 439759 CTTACCACTATACTACCGAGGATT 439782 >seq230 Length=456428 Score = 109 bits (120), Expect = 6e-19 Identities = 74/82 (90%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||| ||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 144850 AAAAGTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 144909 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 144910 CTTACCACTATACTACCGAGGA 144931 >seq89 Length=772902 Score = 109 bits (120), Expect = 6e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 599996 AAAATTGGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 600055 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 600056 TACCACTATACTACCGAGGA 600075 >seq708 Length=148384 Score = 104 bits (114), Expect = 3e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 79904 AAATTGGCTCGCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTT 79845 Query 60119 ACCACTATACTACCGAGGATTG 60140 | |||||||||||||||||||| Sbjct 79844 ATCACTATACTACCGAGGATTG 79823 >seq932 Length=98639 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||||| |||| |||| |||||||||| || |||| |||||||||||||||| ||||| Sbjct 72952 AAATTGGCTCCCCGGCGGGGAATCGAAACCCGGTCACCCGCGTGACAGGCGGGGATACTT 72893 Query 60119 ACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 72892 ACCACTATACTACCGAGGA 72874 >seq622 Length=179467 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 114755 AAAATTGGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 114814 Query 60118 CACCACTATACTAC 60131 || |||||||||| Sbjct 114815 TACAACTATACTAC 114828 >seq466 Length=244755 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60059 AAATTTT-CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||||| |||| |||| |||||||||||| ||||||||||| |||||||| ||||| Sbjct 141216 AAATTTGGCTCCCCGGCGGGGAATCGAACCTCGGTCTCCCGCGCTACAGGCGGGGATACT 141275 Query 60118 CACCACTATACTACCGAGGATT 60139 ||||||||||||| ||||||| Sbjct 141276 TACCACTATACTACTGAGGATT 141297 >seq1061 Length=73466 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||| ||||||||||| ||||| |||||||||||| Sbjct 29973 CGGCGGGGAATCGAACCCCGGTCTCCCGTGTGACAGGCGGGGATACTTACCACTATACTA 30032 Query 60131 C 60131 | Sbjct 30033 C 30033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571777308302360