Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 1e-15 seq489 96.9 5e-15 seq1015 91.5 2e-13 seq208 84.2 3e-11 >seq11 Length=1412137 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 |||||| || |||||| ||||||||||||||||| || || || ||| || ||||| Sbjct 714639 AGCTGGTGTGATTGACAGCGATTATAGAGGAAATGTTGGTGTTCTACTATACAACCATTC 714698 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 | |||| || || ||| |||||| ||| |||||| | | ||| | |||||||| || || Sbjct 714699 TGATGATGACTTCATAGTAAATAAAGGGGATAGAGTTGCACAACTTATATGTGAGAAGAT 714758 Query 10619 TTTATATCC 10627 | ||| ||| Sbjct 714759 TGTATGTCC 714767 >seq489 Length=245457 Score = 96.9 bits (106), Expect = 5e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| | ||||| || | ||||||||||| || || |||||||| Sbjct 239821 CCACCTCTCAGTCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGAC 239762 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | |||||| |||||||| ||||| | ||||||||| || ||| Sbjct 239761 AGAGTACGCCCATCTTCAAGTTGTTTGCCAGCAAATATCAAACGTTGCTGATCAGGTGGA 239702 Query 146171 ATTCCT 146176 || ||| Sbjct 239701 ATACCT 239696 >seq1015 Length=63577 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 178086 ATAATATATAAAAGTGAGAATATCATTAGTTATTAACACATCTTTTTCTTCAAATAAAGG 178145 ||| | |||||| || | ||| ||| |||||||||| | || ||||||||||||||| || Sbjct 49960 ATAGTGTATAAAGGTTAAAATGTCACTAGTTATTAATATATTTTTTTCTTCAAATAATGG 50019 Query 178146 ATACCATATATCTTTAAACCAAGAACCTAACTTAAAAT 178183 | |||| |||||||| |||||| ||||| || |||| Sbjct 50020 AAACCAAATATCTTTGAACCAATTACCTACATTTAAAT 50057 >seq208 Length=490746 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 28087 ATGTTTTGGGCaaaaaaaTTAATTGAATGGACTAATTCTCCTCA-AGATGCCATCGATAA 28145 |||| ||||||||||| || | ||||||||| || |||| | ||| || | | | | Sbjct 174730 ATGTACTGGGCAAAAAAGATACTAGAATGGACTGATACTCCAGATAGA-GCACTAGCTGA 174672 Query 28146 AACAATTTATCTTAATGATAAATATTTTTTCGATGGATATGATCCTATGGGATATGTTAA 28205 |||||||||| ||||| |||||| | ||||| ||| |||| || | |||| Sbjct 174671 TGCAATTTATCTCAATGACAAATATAGCATGGATGGTCGTGACCCTAGTGGTTTTGTTGG 174612 Query 28206 -TATATTATGGTCAATAGGAGGATTGCATGA-CAGAGCATTCAAAGAAAGAGAAATGTAT 28263 | ||| ||||||||| | || | ||||| ||| | || | |||||||||||| | | Sbjct 174611 GTGTATG-TGGTCAATATGTGGCATTCATGATCAGGG-ATGGAGAGAAAGAGAAATTTTT 174554 Query 28264 GGAAAAATAAGATTTATG 28281 |||||||| || | |||| Sbjct 174553 GGAAAAATTAGGTATATG 174536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743474009271040