Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq476 127 2e-24 >seq476 Length=239761 Score = 127 bits (140), Expect = 2e-24 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 |||||| ||||| |||| ||| ||||||||||||||||| ||||||||||| ||| || Sbjct 225775 AATATATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTG 225716 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTA 16622 || |||||||| |||||||| || | || ||| ||||| ||| |||| | ||| | | Sbjct 225715 GAATCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAG-AAAATCGTTCAACAA 225657 Query 16623 AGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTG 16671 ||||| ||||| || ||||| ||| |||||||| || | || ||| Sbjct 225656 GATTTTCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTG 225608 Score = 118 bits (130), Expect = 1e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 16254 ATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTT 16313 || |||| || ||| || | ||| || ||| || | |||||||||| ||||| || Sbjct 226104 ATACTTCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTT 226045 Query 16314 TTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAA 16373 | || | |||||||| || ||||| ||||| || ||||||||||| || || |||| Sbjct 226044 TCTTCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAA 225985 Query 16374 ATGCAACCAATCGCTCACCGTACGTT-CTAt--ttttactttctatccattttttagccc 16430 ||||||| || | ||||| | ||| || | | | ||| ||||||||| ||||| Sbjct 225984 ATGCAACTAACCTTTCACCAAAAGTTGCTTTGCTATCACT---TATCCATTTAAGAGCCC 225928 Query 16431 aatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAA 16480 ||| ||| || | ||| ||||| |||| | || || |||||||||||| Sbjct 225927 AATCTGCCTTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAAA 225878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462479410248200