Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq476 149 6e-31 >seq476 Length=239761 Score = 149 bits (164), Expect = 6e-31 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 ||||||||| ||| || || || ||| |||||||||||||| ||||||| ||| || Sbjct 226099 TCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCTTC 226040 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14347 |||||||||| |||||| || ||| || || ||||| || || || |||||||| || Sbjct 226039 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATGCA 225980 Query 14348 ATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAt 14407 | ||| | ||| ||||| | |||||| | | ||||||||| |||||| || | Sbjct 225979 ACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTGCC 225920 Query 14408 ttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449 || ||||| | | | ||| |||||||| |||||||||||| Sbjct 225919 TTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAAA 225878 Score = 136 bits (150), Expect = 4e-27 Identities = 150/196 (77%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 14445 ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14504 |||||||| | || ||| | | |||| | ||||||||||| | |||||||||||||| Sbjct 225802 ATAAATGTACTTTTCTTTTGGGTCCTGAA-TATATGTATCAATTAATAAGCTATACATTT 225744 Query 14505 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14564 | || ||||| || ||||| ||| || || ||||||||||||||||| || | || Sbjct 225743 CTGAATGTATATTCTCCATCATTATTTGGAATCCATAAAAACATCTAGCCTCAGTTACTT 225684 Query 14565 GTACCTCT-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14623 | || ||| ||| |||||| ||| | | |||||||||||| || ||||| ||| ||| Sbjct 225683 GAACTTCTTGAG-AAAATCGTTCAACAAGATTTTCATTAACAATGCCATCTGAAGCAGCA 225625 Query 14624 AAAAATGCCAATATGT 14639 |||||||| |||| || Sbjct 225624 AAAAATGCTAATACGT 225609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482311612723160