Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq476 116 3e-21 seq308 102 7e-17 seq489 82.4 7e-11 >seq476 Length=239761 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| || || ||||| || || || ||||| |||||||| || ||| | || ||| || Sbjct 225608 CACGTATTAGCATTTTTTGCTGCTTCAGATGGCATTGTTAATGAAAATCTTGTTGAACGA 225667 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||||| |||||||| ||||| || ||||| ||||| ||||| ||||| ||| | || Sbjct 225668 TTTTCTCAAGAAGTTCAAGTAACTGAGGCTAGATGTTTTTATGGATTCCAAATAATGATG 225727 Query 57807 GAAAACGTGCATTCAGAAATGTAT 57830 || || | ||||||||||||||| Sbjct 225728 GAGAATATACATTCAGAAATGTAT 225751 Score = 98.7 bits (108), Expect = 9e-16 Identities = 130/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAA---AAAGCGCCACGGCCACGTTCGCCGAG 57971 ||||||||||| ||| | | |||||||||| | ||| | || || || | || Sbjct 225915 AAGAAGGCAGATTGGGCTCTTAAATGGATAAGTGATAGC---AAAGCAACTTTTGGTGAA 225971 Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATA 58031 ||| || | || || || || || ||||||||||| || || || || ||||| ||| || Sbjct 225972 AGGTTAGTTGCATTTGCTGCTGTGGAAGGTATATTTTTCTCTGGAAGTTTTGCTGCATTA 226031 Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090 |||||| |||||||| | || | ||||| || | || |||||||| ||| |||| || Sbjct 226032 TTTTGGTTGAAGAAAAGAGGATTAATGCCAGGATTAACTTTTAGCAATGAGCTGATTTC 226090 >seq308 Length=372676 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||||||||| || ||||| || ||||| || || ||||| |||| ||||| | Sbjct 102549 AACATGCAAATTTTTGTGAAGACCCTTACAGGGAAGACCATCACTCTCGAGGTTGAGTCT 102608 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | | |||| |||||| | ||| || || ||||| | ||||| || Sbjct 102609 TCCGACACTATTGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCGCCAGAT 102668 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || ||| | || ||||| ||||| ||| | |||||| || || |||||| Sbjct 102669 CAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGACGTACATTGTCGGATTAT 102728 Query 31370 AACATTCAAAA 31380 ||||| ||||| Sbjct 102729 AACATCCAAAA 102739 >seq489 Length=245457 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATG 31360 || || || ||||| ||| | ||||| ||||||||||| | ||||| ||| || Sbjct 239703 CCACCTGATCAGCAACGTTTGATATTTGCTGGCAAACAACTTGAAGATGGGCGTACTCTG 239762 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||||||||||||||| || || || |||| ||||||||||| || ||| Sbjct 239763 TCAGATTACAACATTCAAAAAGAATCTACCCTCCACTTGGTTCTTAGACTGAGAGGTGGT 239822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445734990185040